Table 5.
Associations between exposure and gene expression in 16-y-old BAMSE children ().
| Probe ID | Gene | during infancy | at 16 y | ||||
|---|---|---|---|---|---|---|---|
| LogFCa | p-value | FDRbp-value | LogFCa | p-value | FDRbp-value | ||
| TC12001696.hg.1 | IFNG | 0.04 | 0.41 | 0.49 | 0.06 | 0.29 | 0.69 |
| TC02002219.hg.1 | IL1B | 0.30 | 0.42 | 0.01 | 0.09 | ||
| TC01003766.hg.1 | IL10 | 0.09 | 0.003 | 0.06 | 0.05 | 0.13 | 0.59 |
| TC03000870.hg.1 | IL12A | 0.04 | 0.13 | 0.19 | 0.08 | 0.02 | 0.09 |
| TC05001997.hg.1 | IL12B | 0.03 | 0.33 | 0.43 | 0.02 | 0.66 | 0.79 |
| TC05000640.hg.1 | IL13 | 0.07 | 0.01 | 0.07 | 0.08 | 0.02 | 0.09 |
| TC04001520.hg.1 | IL2 | 0.05 | 0.13 | 0.19 | 0.004 | 0.93 | 0.93 |
| TC05000641.hg.1 | IL4 | 0.03 | 0.44 | 0.49 | 0.86 | 0.93 | |
| TC07000137.hg.1 | IL6 | 0.001 | 0.97 | 0.97 | 0.02 | 0.54 | 0.69 |
| TC04000408.hg.1 | IL8 | 0.84 | 0.89 | 0.01 | 0.89 | 0.93 | |
| TC6_apd_hap1000036.hg.1 | TNF | 0.09 | 0.04 | 0.07 | 0.06 | 0.28 | 0.69 |
| TC06000371.hg.1c | TNF | 0.08 | 0.04 | 0.07 | 0.03 | 0.51 | 0.69 |
Note: IFN, interferon; IL, interleukin; TNF, tumor necrosis factor.
Results are obtained by means of linear regression analyses and presented per increase of exposure. Adjusted for child’s sex, DD asthma ever up to 16 y of age, municipality at birth, and measured cell counts. (one unit of the logFCs translates to a two-fold change in expression).
.
Seven alternatives haplotypes assemblies of this TNF probeset are available (apd, cox, dbb, mann, mcf, qbl and ssto) and bear similar log2 intensity values.