Table 1. Targeting frequencies following electroporation of insertion vectors pI_hygGFP into WT JM8 (parental or subcloned N4 or F6 lines as indicated) and heterozygous mutant tm1a/+ (knockout first) ES cells, selection in hygromycin and screening/genotyping by long range-PCR on genomic DNA.
Targeted gene (MGI symbol) | ES cell line/allele used for targeting | ES cell clone ID | Number of colonies screened | % clones targeted | MGI name for pI_hygGFP targeted allele (tm2) |
---|---|---|---|---|---|
Brd8 | JM8.N4 | 24 | 96 | Brd8tm1Wcs | |
JM8.N4/Brd8 tm1a(EUCOMM)Wtsi/+ | E10 | 22 | 100 | ||
Cbx1 | JM8.N4/Cbx1tm1a(EUCOMM)Wtsi/+ | B01 | 24 | 45.8 | Cbx1tm1Wcs |
Ddx27 | JM8.N4 | 24 | 100 | Ddx27tm1Wcs | |
JM8.F6/Ddx27 tm1a(KOMP)Wtsi/+ | E01 | 6* | 0 | ||
Dot1l | JM8 parental/Dot1l tm1a(KOMP)Wtsi/+ | D02 | 24 | 54.2 | Dot1ltm1Wcs |
Epc2 | JM8 parental/Epc2 tm1a(EUCOMM)Wtsi/+ | B12 | 24 | 45.8 | Epc2tm1Wcs |
Ing3 | JM8.N4 | 24 | 79 | Ing3tm1Wcs | |
JM8.N4/Ing3 tm1a(EUCOMM)Wtsi/+ | E07 | 16 | 81 | ||
Jarid2 | JM8 parental/Jarid2 tm1a(KOMP)Wtsi/+ | A08 | 24 | 62.5 | Jarid2tm1Wcs |
JM8 parental/Jarid2 tm1a(KOMP)Wtsi/+ | E08 | 24 | 62.5 | ||
Kdm4c | JM8.N4 | 12 | 100 | Kdm4ctm1Wcs | |
JM8.F6/Kdm4c tm1a(KOMP)Wtsi/+ | D03 | 24 | 75 | ||
Mier1 | JM8.N4 | 24 | 66.7 | Mier1tm1Wcs | |
JM8.N4/Mier1 tm1a(EUCOMM)Wtsi/+ | A04 | 24 | 66.7 | ||
Phf20 | JM8.N4 | 24 | 62.5 | Phf20tm1Wcs | |
JM8.N4/Phf20 tm1a(EUCOMM)Wtsi/+ | F07 | 0 | 0 | ||
Setdb1 | JM8.N4 | 16 | 100 | Setdb1tm1Wcs | |
JM8.N4/Setdb1 tm1a(EUCOMM)Wtsi/+ | D08 | 40 | 0 | ||
Smyd5 | JM8.N4 | 16 | 62.5 | Smyd5tm1Wcs | |
JM8.N4/Smyd5 tm1a(EUCOMM)Wtsi/+ | G01 | 24 | 25 | ||
Supv3l1 | JM8.N4 | 24 | 50 | Supv3l1tm1Wcs | |
JM8.N4/Supv3l1 tm1a(EUCOMM)Wtsi/+ | B08 | 24 | 70.8 | ||
Kmt5b | JM8 parental/Kmt5b tm1a(KOMP)Wtsi/+ | C01 | 24 | 16.7 | Kmt5btm1Wcs |
*Only a low number of colonies were obtained; all were screened.