Table 7.
Attribute | B. hungatei MB2003 | B. hungatei JK615Tb | B. proteoclasticus B316T | |||
---|---|---|---|---|---|---|
Value | % of totala | Value | % of totala | Value | % of totala | |
Status | Complete | Draft | Complete | |||
Isolation source | Bovine rumen | Ovine rumen | Bovine rumen | |||
Genome size (bp) | 3,386,314 | 100 | 3,394,947 | 100 | 4,404,886 | 100 |
DNA coding (bp) | 3,064,986 | 90.51 | 3,108,180 | 91.55 | 3,954,077 | 89.77 |
DNA G + C (bp) | 1,344,683 | 39.71 | 1,353,252 | 39.86 | 1,762,323 | 40.01 |
Number of replicons | 4 | NA | 4 | |||
DNA scaffolds | 4 | 100 | 22 | 100 | 4 | 100 |
Total genes | 3064 | 100 | 3104 | 100 | 3863 | 100 |
Protein coding genes | 2983 | 97.36 | 2996 | 96.52 | 3739 | 96.79 |
RNA genes | 60 | 1.96 | 55 | 1.78 | 68 | 1.75 |
rRNA operons | 4 | 4 | 6 | |||
tRNA genes | 48 | 1.57 | 46 | 1.49 | 50 | 1.29 |
Pseudo genes | 17 | 0.56 | 49 | 54 | 1.39 | |
Genes in internal clusters | 160 | 5.22 | 211 | 6.82 | 327 | 8.43 |
Genes with function prediction | 2225 | 72.62 | 2314 | 74.55 | 2505 | 64.85 |
Genes assigned to COGs | 1842 | 61.34 | 1861 | 60.17 | 2075 | 53.49 |
Genes with Pfam domains | 2350 | 78.26 | 2407 | 77.82 | 2784 | 71.77 |
Genes with signal peptides | 148 | 4.93 | 137 | 4.43 | 269 | 6.93 |
Genes with transmembrane helices | 881 | 29.34 | 847 | 27.38 | 1061 | 27.35 |
CRISPR repeats | 2 | NA | NA | |||
Reference | This report | [32] | [29] |
aThe total is based on either the size of the genome in base pairs or the total number of genes or protein-coding genes in the annotated genome. bIndicates draft genome sequence