Table 8.
Comparison of MB2003, JK615T and B316T protein coding gene percentages to COG functional categories
| Code | % of totala | Description | ||
|---|---|---|---|---|
| MB2003 | JK615T | B316T | ||
| J | 9.52 | 9.33 | 8.96 | Translation |
| A | RNA processing and modification | |||
| K | 7.31 | 7.59 | 7.30 | Transcription |
| L | 4.32 | 4.59 | 4.63 | Replication, recombination and repair |
| B | Chromatin structure and dynamics | |||
| D | 1.57 | 1.60 | 1.44 | Cell cycle control, mitosis and meiosis |
| V | 3.19 | 2.90 | 3.19 | Defense mechanisms |
| T | 6.82 | 6.72 | 7.47 | Signal transduction mechanisms |
| M | 7.61 | 7.45 | 8.52 | Cell wall/membrane biogenesis |
| N | 2.99 | 3.29 | 2.75 | Cell motility |
| U | 1.08 | 1.26 | 1.14 | Intracellular trafficking and secretion |
| O | 3.83 | 3.63 | 3.89 | Posttranslational modification, protein turnover, chaperones |
| C | 3.39 | 3.63 | 3.72 | Energy production and conversion |
| G | 11.93 | 11.99 | 12.15 | Carbohydrate transport and metabolism |
| E | 8.69 | 8.85 | 7.91 | Amino acid transport and metabolism |
| F | 3.93 | 3.82 | 3.98 | Nucleotide transport and metabolism |
| H | 3.88 | 3.77 | 3.23 | Coenzyme transport and metabolism |
| I | 3.53 | 3.19 | 2.80 | Lipid transport and metabolism |
| P | 3.88 | 4.06 | 2.75 | Inorganic ion transport and metabolism |
| Q | 0.79 | 0.68 | 0.79 | Secondary metabolites biosynthesis, transport and catabolism |
| R | 7.76 | 6.91 | 7.43 | General function prediction only |
| S | 3.58 | 3.53 | 4.11 | Function unknown |
| – | 40.33 | 39.83 | 46.51 | Not in COGs |
aThe percentage is based on the total number of protein coding genes in the genome