Table 2.
Outlier loci (N = 19) identified in at least one test for selection (BayeScan, BayPass, or SweeD) and one GEA test (LFMM or BayPass_GEA). SNP shows the position in contig containing the outlier loci. Tests show which tests identified the SNP as an outlier: BPG = BayPass_GEA; BPD = BayPass_Diversifying; BS = BayeScan; SW = SweeD; LFMM = LFMM.
| Contig | SNP | Ensemble Gene ID | Gene | Tests |
|---|---|---|---|---|
| 27887-125 | 142 | ENSMUSG00000029440 | proteasome 26S subunit, non-ATPase, 9 | BPG, BS |
| 3135-709 | 210 | ENSMUSG00000002320 | transmembrane 9 superfamily member 1 | BPG, BS |
| 37015-34 | 35 | ENSMUSG00000037287 | tubulin folding cofactor E-like | BS, BPD |
| 5754-511 | 168 | ENSMUSG00000041161 | OTU domain containing 3 | BPG, BS |
| 7280-442 | 336 | ENSMUSG00000021287 | X-ray repair complementing defective repair in CHC3 | BPD, LFMM |
| 2260-821 | 1387 | ENSMUSG00000024045 | A kinase (PRKA) anchor protein 8 | BPG, BS |
| 27691-127 | 162 | NA | NA | BPG, BS |
| 27707-127 | 567 | ENSMUSG00000106907 | autophagy related 2A | BPG, BS, BPD |
| 3567-665 | 756 | ENSMUSG00000001700 | GRAM domain containing 3 | BPG, BS, BPD |
| 10099-359 | 1465 | ENSMUSG00000024066 | xanthine dehydrogenase | BPG, SW |
| 12107-321 | 433 | NA | NA | BPG, BS |
| 124-2491 | 596 | ENSMUSG00000064358 | cytochrome c oxidase III | BPG, SW |
| 12685-311 | 481 | ENSMUSG00000035637 | glyoxylate reductase/hydroxypyruvate reductase | BPG, BPD |
| 17856-243 | 2695 | ENSMUSG00000021091 | serine peptidase inhibitor, clade A, member 3N | LFMM, SW |
| 22102-206 | 245, 1029 | ENSMUSG00000045868 | GTPase, very large interferon inducible 1 | BPG, BPD, LFMM |
| 34737-52 | 125, 257 | NA | NA | BPG, BPD |
| 35973-42 | 17 | ENSMUSG00000001173 | oculocerebrorenal syndrome of Lowe | BPG, BS |
| 38397-23 | 175 | NA | NA | BPG, BS |
| 8088-415 | 154 | ENSMUSG00000002379 | NADH dehydrogenase 1 alpha subcomplex 11 | BPG, BPD, LFMM |