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. 2017 Nov 8;6(11):e101. doi: 10.1038/emi.2017.89

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Copyright © 2017 The Author(s)

This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

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Phylogeny of MERS-CoV full genomes or near-full genomes from humans and dromedary camels. (A) The number of samples sequenced in this study that fell into each lineage. Yellow, lineage 2; green, lineage 3; orange, lineage 5; blue, lineage 6; and purple, lineage 7. (B) Maximum likelihood phylogenetic analysis of 126 complete and 3 nearly complete camel MERS-CoV genomes and 111 previously published human and camel MERS-CoV genomes. Red closed circles, camel samples sequenced in this study. Red open circles, camel samples previously sequenced from UAE by our lab. Green closed circles, human samples previously sequenced by our lab. Camel samples are denoted with a camel symbol. * indicate genomes that are nearly complete. Yellow shading indicates the German MERS-CoV case linked to the market in this study. Light blue shading indicates closely related sequences from camels that were housed in the same pen. Bootstrap values are shown next to the branches. The scale bar indicates the number of nucleotide substitutions per site. Middle East respiratory syndrome coronavirus, MERS-CoV.