Table 1.
Sequencing Metrics of the 24 RNA-seq Libraries.
| Source | Library | Total Paired reads | Mapped to genome1 (%) |
|---|---|---|---|
| BX-inoculated | 27h1 | 115395024 | 66715774 (57.82%) |
| 27h2 | 105082618 | 57250387 (54.48%) | |
| 27h3 | 117369628 | 72341823 (61.64%) | |
| 51h1 | 114691296 | 70672111 (61.62%) | |
| 51h2 | 100471284 | 60368380 (60.09%) | |
| 51h3 | 114125392 | 68667955 (60.17%) | |
| BX-mock inoculated | 27h1 | 114180298 | 70896658 (62.09%) |
| 27h2 | 103145302 | 65754668 (63.75%) | |
| 27h3 | 116999816 | 70119544 (59.93%) | |
| 51h1 | 106792164 | 61916764 (57.98%) | |
| 51h2 | 113653906 | 67191970 (59.12%) | |
| 51h3 | 112149142 | 69692133 (62.14%) | |
| NK-inoculated | 27h1 | 138481276 | 84126351 (60.75%) |
| 27h2 | 123416978 | 68739521 (55.7%) | |
| 27h3 | 126225298 | 77218929 (61.18%) | |
| 51h1 | 113247820 | 70800498 (62.52%) | |
| 51h2 | 101095984 | 65529847 (64.82%) | |
| 51h3 | 117431024 | 76564366 (65.2%) | |
| NK-mock inoculated | 27h1 | 115028580 | 75150383 (65.33%) |
| 27h2 | 121953596 | 74191028 (60.84%) | |
| 27h3 | 116505584 | 73716059 (63.27%) | |
| 51h1 | 100662528 | 61616707 (61.21%) | |
| 51h2 | 110687792 | 67928624 (61.37%) | |
| 51h3 | 115598376 | 71924504 (62.22%) |
1The genome was from http://banana-genome.cirad.fr/ 26.