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. 2017 Dec 1;83(24):e01709-17. doi: 10.1128/AEM.01709-17

TABLE 2.

Primers used

Primer name Oligonucleotide sequence (5′ to 3′)a Purposeb Reference
Strep. 16S rRNA-RT-F AAGCAACGCGAAGAACCTTA qRT-PCR 4
Strep. 16S rRNA-RT-R GTCTCGCTAGAGTGCCCAAC qRT-PCR 4
Ss lytF F CTCCTGCGTCATACCACTGA qRT-PCR
Ss lytF R CAGGAGGTACAGGACGCATT qRT-PCR
Ss comC RTF TGAAAATCTATTCTTTTCAAATTGC qRT-PCR
Ss comC RTR CCATGGATTTGGAACACCTC qRT-PCR
Ss comD RTF GGAGATTCAGCTTTAAGGAGTGTC qRT-PCR 31
Ss comD RTR ACAACTTGATTGGAAGGCGTTC qRT-PCR 31
Ss comE RTF TTGGAATTGACATCCAGGTTC qRT-PCR
Ss comE RTR TGTTTCCTCCCCCTTAATGTC qRT-PCR
Ss comX RTF CAAGAAAGCCAAAAGCGAAA qRT-PCR
Ss comX RTR TCGCTTCTCTGAAGGCAACT qRT-PCR
Ss comYA RTF TGATTAGGCAGGCTCGGCAAGAAG qRT-PCR 31
Ss comYA RTR AAGCGGCGTTCATCACCAATTCTC qRT-PCR 31
Ss purD RTF GCGTGGCTTCTGTCAAGATT qRT-PCR
Ss purD RTR CCAGCTTCTGCGATTTCTTC qRT-PCR
Ss purH RTF GAGCTGGAGTGGTCCAAAGA qRT-PCR
Ss purH RTR TCCCTGCTTTTCGATGTAGG qRT-PCR
Ss lytF US-F TGGAATGTTCGGAAATTCCA lytF KO
Ss lytF US-R ATCAAACAAATTTTGGGCCCGGGATATTTCTTCATAAAACTC lytF KO
Ss lytF DS-F ATTCTATGAGTCGCTGCCGACTCCTAAATAAGTCGCTTTCGC lytF KO
Ss lytF DS-R CGAGTGGCTTTGGAATTTGC lytF KO
Erm-L CCGGGCCCAAAATTTGTTTGAT Erythromycin cassette
Erm-R AGTCGGCAGCGACTCATAGAAT Erythromycin cassette
SS lytF-c_L AGTGAATTCGAGCTCGGTACCCGGACCAAGCTAACACATCACGTA lytF complementation
SS lytF-c_R AACAGCTATGACCATGATTACGCCGAGCAGTCTGCTCAAAGTAG lytF complementation
pDL278_1L TCCCCGGGTACCGAGCTCGAATTCACT Concatenation
pDL278_1R CTTGGCGTAATCATGGTCATAGCTGTT Concatenation
5′ SS lytF gs-F ATTATCCGGAGCTGTCCTAGGT 5′ RACE
5′ SS lytF gs inner-R AAGCTTGATAAGGTTCTTGAGCTTGAGAACG 5′ RACE
5′ SS lytF gs outer-R AGCGCTCTCCTATCCGTATGTAAG 5′ RACE
a

Oligonucleotides were created for this study unless otherwise specified.

b

KO, knockout.