TABLE 2.
Primers used
Primer name | Oligonucleotide sequence (5′ to 3′)a | Purposeb | Reference |
---|---|---|---|
Strep. 16S rRNA-RT-F | AAGCAACGCGAAGAACCTTA | qRT-PCR | 4 |
Strep. 16S rRNA-RT-R | GTCTCGCTAGAGTGCCCAAC | qRT-PCR | 4 |
Ss lytF F | CTCCTGCGTCATACCACTGA | qRT-PCR | |
Ss lytF R | CAGGAGGTACAGGACGCATT | qRT-PCR | |
Ss comC RTF | TGAAAATCTATTCTTTTCAAATTGC | qRT-PCR | |
Ss comC RTR | CCATGGATTTGGAACACCTC | qRT-PCR | |
Ss comD RTF | GGAGATTCAGCTTTAAGGAGTGTC | qRT-PCR | 31 |
Ss comD RTR | ACAACTTGATTGGAAGGCGTTC | qRT-PCR | 31 |
Ss comE RTF | TTGGAATTGACATCCAGGTTC | qRT-PCR | |
Ss comE RTR | TGTTTCCTCCCCCTTAATGTC | qRT-PCR | |
Ss comX RTF | CAAGAAAGCCAAAAGCGAAA | qRT-PCR | |
Ss comX RTR | TCGCTTCTCTGAAGGCAACT | qRT-PCR | |
Ss comYA RTF | TGATTAGGCAGGCTCGGCAAGAAG | qRT-PCR | 31 |
Ss comYA RTR | AAGCGGCGTTCATCACCAATTCTC | qRT-PCR | 31 |
Ss purD RTF | GCGTGGCTTCTGTCAAGATT | qRT-PCR | |
Ss purD RTR | CCAGCTTCTGCGATTTCTTC | qRT-PCR | |
Ss purH RTF | GAGCTGGAGTGGTCCAAAGA | qRT-PCR | |
Ss purH RTR | TCCCTGCTTTTCGATGTAGG | qRT-PCR | |
Ss lytF US-F | TGGAATGTTCGGAAATTCCA | lytF KO | |
Ss lytF US-R | ATCAAACAAATTTTGGGCCCGGGATATTTCTTCATAAAACTC | lytF KO | |
Ss lytF DS-F | ATTCTATGAGTCGCTGCCGACTCCTAAATAAGTCGCTTTCGC | lytF KO | |
Ss lytF DS-R | CGAGTGGCTTTGGAATTTGC | lytF KO | |
Erm-L | CCGGGCCCAAAATTTGTTTGAT | Erythromycin cassette | |
Erm-R | AGTCGGCAGCGACTCATAGAAT | Erythromycin cassette | |
SS lytF-c_L | AGTGAATTCGAGCTCGGTACCCGGACCAAGCTAACACATCACGTA | lytF complementation | |
SS lytF-c_R | AACAGCTATGACCATGATTACGCCGAGCAGTCTGCTCAAAGTAG | lytF complementation | |
pDL278_1L | TCCCCGGGTACCGAGCTCGAATTCACT | Concatenation | |
pDL278_1R | CTTGGCGTAATCATGGTCATAGCTGTT | Concatenation | |
5′ SS lytF gs-F | ATTATCCGGAGCTGTCCTAGGT | 5′ RACE | |
5′ SS lytF gs inner-R | AAGCTTGATAAGGTTCTTGAGCTTGAGAACG | 5′ RACE | |
5′ SS lytF gs outer-R | AGCGCTCTCCTATCCGTATGTAAG | 5′ RACE |
Oligonucleotides were created for this study unless otherwise specified.
KO, knockout.