Table 4.
Support for monophyletic genus Anopheles within Anophelinae, rooted by Chagasia. LKS is Lophopodomyia, Kerteszia and Stethomyia, subgenera of Anopheles.
| software | model/method | RefSeq | monophyletic Anopheles | Chagasia + LKS | electronic supplementary material, figure |
|---|---|---|---|---|---|
| PB | CAT-GTR | + | 0.72 | 0.20 | S10 |
| PB | CAT-GTR | − | 0.71 | 0.12 | S11 |
| PB | CAT60-MtArt | + | 0.01 | 0.905 | S12 |
| PB | CAT60-MtArt | − | 0.0 | 0.90 | S13 |
| PB | CAT-Poisson | + | 0.105 | 0.785 | S14 |
| PB | CAT-Poisson | − | 0.045 | 0.84 | S15 |
| RAxML | JTT+F, RAxML-CATa | + | 0.22 | 0.55 | S16 |
| RAxML | JTT+F, RAxML-CAT | − | 0.31 | 0.39 | S17 |
| PAUP* | maximum parsimony | + | 0.53 | 0.24 | S18 |
| PAUP* | maximum parsimony | − | 0.56 | 0.21 | S19 |
aProttest was used for model choice for the RAxML analysis. Prottest recommended JTT+G+F with an AICw of 1.0, and so that model was used, although for the RAxML rapid bootstrap the RAxML-CAT ASRV (among-site rate variation) was used, with only the final optimization evaluated with Gamma ASRV.