Table II. Putative orthologs of Focal List members in 16 selected angiosperm species.
| Species | Classification | No. of Sequencesa | No. of Orthologsb | Percentage of Focal List |
|---|---|---|---|---|
| Medicago sativa (CADL)c | IRLC Legume | 84,484 | 1,230 | 50 |
| Cicer arietinum | IRLC Legume | 34,299 | 628 | 25 |
| Trifolium subterraneum | IRLC Legume | 42,186 | 615 | 25 |
| Nonredundant IRLC Legume orthologs | 1,318 | 53 | ||
| Glycine max | Non-IRLC Legume | 199,288 | 636 | 26 |
| Glycine soja | Non-IRLC Legume | 51,857 | 602 | 24 |
| Vigna angularis | Non-IRLC Legume | 103,454 | 579 | 23 |
| Phaseolus vulgaris | Non-IRLC Legume | 71,796 | 559 | 23 |
| Lotus japonicus | Non-IRLC Legume | 9,535 | 268 | 11 |
| Nonredundant Non-IRLC Legume orthologs | 798 | 32 | ||
| Vitis vinifera | Nonlegume Dicot | 95,739 | 450 | 18 |
| Solanum lycopersicum | Nonlegume Dicot | 43,173 | 426 | 17 |
| Arabidopsis thaliana | Nonlegume Dicot | 287,700 | 400 | 16 |
| Nicotiana benthamiana | Nonlegume Dicot | 787 | 19 | 1 |
| Nonredundant Nonlegume Dicot orthologs | 548 | 22 | ||
| Brachypodium distachyon | Monocot | 77,875 | 358 | 15 |
| Oryza sativa | Monocot | 346,600 | 349 | 14 |
| Zea mays | Monocot | 210,577 | 335 | 14 |
| Nonredundant Monocot orthologs | 430 | 17 | ||
| Amborella trichopoda | Basal Angiosperm | 48,088 | 349 | 14 |
| Total Focal List genes | 2,455 | |||
| Total Focal List genes with orthologs |
1,371 | |||
a
Total number of protein sequences used that were retrieved from the National Center for Biotechnology Information (NCBI) protein database (including GenBank, RefSeq, UniprotKB/Swiss-Prot, PIR, DDBJ, EMBL, and PDB).
b
Putative orthologs were identified based on the reciprocal-best-BLAST-hits approach using Protein-BLAST search.
c
The M. sativa protein sequences from the diploid alfalfa, Cultivated Alfalfa at the Diploid Level (CADL), were obtained from www.alfalfatoolbox.org.