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Energy terms for structure prediction in different contexts
| Context | Term | Description | Unit | Ref. |
|---|---|---|---|---|
| Membrane Environment | fa_mpsolv | Solvation energy dependent on the protein orientation relative to the membrane | kcal/mol | [119,122] |
| fa_mpenv | One-body membrane environment energy dependent on the protein orientation relative to the membrane | kcal/mol | [119,122] | |
| pH | e_pH | Likelihood of side chain protonation given a user-specified pH | kcal/mol | [118] |
