Table 1.
PacBio SMRT pipeline outputs metrics
| Data type | 1–2kb | 2–3kb | 3–6kb |
|---|---|---|---|
| Number of reads of insert | 248903 | 210594 | 202440 |
| Number of five prime reads | 136440 | 100147 | 54463 |
| Number of three prime reads | 146668 | 109776 | 65571 |
| Number of poly-A reads | 142375 | 106746 | 61281 |
| Number of filtered short reads | 13209 | 8876 | 7165 |
| Number of non-full-length reads | 138909 | 135425 | 175629 |
| Number of full-length reads | 96785 | 66293 | 19646 |
| Number of full-length non-chimeric reads | 96170 | 65955 | 19094 |
| Average full-length non-chimeric read length | 1388 | 1948 | 4357 |
| Number of consensus isoforms | 35248 | 30793 | 17405 |
| Average consensus isoforms read length | 1465 | 2044 | 4376 |
| Number of polished high-quality isoforms | 7414 | 6075 | 636 |
| Number of polished low-quality isoforms | 27834 | 24718 | 16769 |