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. 2017 Dec 7;10:58. doi: 10.1186/s13072-017-0165-x

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© The Author(s) 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — TATA gene bodies are particularly responsive to naked DNA correction. a–c The metagene analysis of the occupancy of the naked (a), raw (b), and corrected (c) data by comparing the TATA (purple) and TATA-like (orange) genes. After classification, genes were aligned to their TSS, as in Fig. 1a. d A spectral analysis of the promoter and gene body nucleosomes of the TATA and TATA-like genes. Details as in Fig. 1c, d. e, f The fuzziness score distribution before (blue) and after correction (red) in the TATA-containing (e) and TATA-like genes (f)