REAGENT or RESOURCE	SOURCE	IDENTIFIER
Software and Algorithms
Algorithm and software for measuring dN/dS in cancer genomes	Cancer Genome Project, Wellcome Trust Sanger Institute	https://github.com/im3sanger/dndscv
Algorithms for calling somatic mutations – ASCAT (copy number)	Cancer Genome Project, Wellcome Trust Sanger Institute	Raine et al., 2016
Algorithms for calling somatic mutations – CaVEMan (substitutions)	Cancer Genome Project, Wellcome Trust Sanger Institute	http://cancerit.github.io/CaVEMan/
Algorithms for calling somatic mutations – Pindel (indels)	Cancer Genome Project, Wellcome Trust Sanger Institute	http://cancerit.github.io/cgpPindel/
Other
BAM files for TCGA exomes	TCGA	https://cancergenome.nih.gov/