Table 4.
Selection of contigs showing differential expression in response to desiccation stress (The complete list can be found in Table S5). Contigs are divided into the following groups: Photosynthesis and photorespiration, carbohydrate metabolism, lipid metabolism, transporter proteins, signaling, stress protection. Selected contigs are displayed with ID, annotation, e-value and fold change (log2 transformed) for group L and P2.
| Contig ID | Annotation | E-value | L | P2 |
|---|---|---|---|---|
| Photosynthesis and photorespiration | ||||
| TR14384|c0_g2_i1 | Photosystem I subunit II | 2.18E-85 | -3.2 | - |
| TR18990|c0_g9_i1 | Photosystem I subunit IV | 5.94E-22 | -2.7 | -4.7 |
| TR1369|c1_g1_i1 | Photosystem I subunit III | 8.25E-76 | -2.5 | - |
| TR59163|c0_g5_i2 | Photosystem I subunit V | 1.36E-28 | -3.0 | - |
| TR21504|c0_g2_i1 | Photosystem I subunit VI | 8.11E-40 | -2.3 | - |
| TR16905|c0_g2_i1 | Photosystem I subunit X | 1.42E-34 | -2.3 | - |
| TR33976|c0_g1_i1 | Photosystem II oxygen-evolving enhancer protein 1 | 3.57E-135 | -3.0 | - |
| TR48275|c1_g1_i1 | Photosystem II oxygen-evolving enhancer protein 3 | 3.9E-49 | -3.4 | - |
| TR20185|c2_g1_i1 | Photosystem II 22kDa protein (PsbS) | 1.08E-83 | -4.6 | -4.1 |
| TR24382|c0_g1_i1 | Photosystem II protein (PsbY) | 4.85E-13 | -3.4 | - |
| TR71565|c0_g1_i1 | Photosystem II protein (Psb27) | 2.46E-36 | -2.5 | - |
| TR64030|c0_g1_i1 | Light-harvesting chlorophyll-protein complex I subunit A4 | 4.67E-116 | -2.9 | - |
| TR37377|c0_g1_i2 | Photosystem I light harvesting complex protein 5 | 2E-93 | -3.0 | - |
| TR62754|c5_g48_i1 | Photosystem II light harvesting complex protein 2.2 | 5.38E-82 | -6.2 | - |
| TR12320|c6_g1_i1 | Light-harvesting chlorophyll B-binding protein 3 | 1.83E-96 | -3.5 | - |
| TR37376|c0_g1_i2 | Light harvesting complex photosystem II | 5.2E-121 | -3.8 | -3.9 |
| TR25593|c4_g1_i1 | Light harvesting complex of photosystem II 5 | 1.57E-117 | -2.7 | - |
| TR1329|c0_g2_i1 | Light harvesting complex photosystem II subunit 6 | 3.79E-92 | -2.8 | - |
| TR75181|c0_g1_i1 | ATPase delta chain | 6.28E-52 | -2.3 | - |
| TR3752|c0_g5_i1 | ATPase subunit b’ | 2E-37 | -2.7 | -4.3 |
| TR4441|c0_g1_i2 | Plastocyanin | -3.75E-37 | -2.5 | - |
| TR31328|c0_g1_i1 | Chlorophyllide a oxygenase | 0 | -2.1 | - |
| TR68443|c0_g1_i3 | Magnesium chelatase subunit | 0 | -4.5 | -4.4 |
| TR8034|c11_g29_i1 | Early light-induced protein, chloroplastic (ELI) | 1.83E-15 | - | 12.2 |
| TR58021|c0_g5_i1 | Early light-induced protein 1, chloroplastic (ELIP1) | 1.43E-21 | 3.5 | 5.2 |
| TR4192|c1_g15_i1 | High molecular mass early light-inducible protein, chloroplastic (HV58) | 1.86E-21 | 5.2 | 4.3 |
| TR4440|c0_g2_i1 | Low molecular mass early light-inducible protein, chloroplastic (HV60) | 4.1E-16 | -3.4 | - |
| TR73556|c0_g9_i2 | (S)-2-Hydroxy-acid oxidase | 0 | -2.5 | -3.5 |
| TR29652|c0_g1_i1 | Serine-glyoxylate transaminase | 0 | -3.4 | -3.6 |
| TR68913|c1_g1_i2 | Glycine dehydrogenase | 0 | -2.6 | -4.2 |
| TR54933|c0_g2_i1 | Glutamate-glyoxylate aminotransferase | 0 | -3.0 | - |
| TR48225|c1_g1_i1 | Glycerate dehydrogenase | 0 | -3.5 | - |
| Carbohydrate metabolism | ||||
| TR23256|c0_g1_i1 | Glycogen phosphorylase | 0 | 8.3 | - |
| TR75230|c1_g1_i1 | alpha-Amylase | 1.95E-175 | 4.3 | - |
| TR70181|c1_g1_i2 | beta-Amylase | 0 | 2.7 | - |
| TR24697|c0_g3_i4 | Isoamylase | 6.66E-40 | 2.6 | - |
| TR25586|c0_g1_i1 | 4-alpha-Glucanotransferase | 1.47E-45 | 2.2 | - |
| TR45454|c0_g2_i1 | Sucrose-phosphatase | 6.91E-108 | 3.6 | - |
| TR61067|c0_g1_i2 | Sucrose synthase | 0 | 3.0 | - |
| Lipid metabolism | ||||
| TR39622|c0_g1_i1 | Lysophospholipid acyltransferase | 4.12E-110 | 2.0 | - |
| TR53082|c0_g1_i1 | Diacylglycerol kinase | 2.68E-160 | 2.0 | - |
| TR16611|c0_g1_i2 | alpha-Galactosidase | 1.91E-154 | 2.3 | 3.5 |
| TR42973|c1_g1_i1 | Sulfoquinovosyltransferase | 4.73E-12 | 3.7 | - |
| TR31318|c0_g1_i1 | Phospholipase D1/2 | 0 | 3.7 | - |
| TR28615|c2_g10_i1 | Phosphoethanolamine N-methyltransferase | 5.8E-102 | 2.9 | 3.2 |
| TR41908|c1_g1_i4 | Phosphatidylserine synthase 2 | 1.62E-177 | - | 3.8 |
| TR13652|c0_g1_i13 | 2-Acylglycerol O-acyltransferase 1 | 2.54E-89 | - | 3.5 |
| Transporter proteins | ||||
| TR43432|c0_g2_i2 | Probable aquaporin TIP1-2 | 8.15E-17 | 13.3 | 13.5 |
| TR43432|c0_g3_i1 | Aquaporin TIP2-1 | 2.25E-32 | 2.9 | 2.7 |
| TR61568|c0_g2_i1 | Aquaporin TIP2-3 | 2.22E-33 | 4.1 | - |
| TR34049|c0_g1_i2 | Plastidic glucose transporter 2 | 2.02E-138 | 4.2 | 3.6 |
| TR23238|c0_g1_i2 | Sucrose transport protein 3 | 2.09E-147 | 2.7 | - |
| TR31|c0_g1_i1 | Glucose-6-phosphate/phosphate translocator 1 | 1.22E-164 | 2.1 | - |
| TR40733|c1_g1_i1 | sugar transport protein 13 | 8.24E-177 | 5.8 | 5.5 |
| TR41946|c0_g1_i8 | sugar-transport protein ERD6-like 16 | 3.33E-71 | 9.0 | - |
| Signaling | ||||
| TR52105|c7_g5_i3 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 | 2.56E-18 | 3.4 | - |
| TR58701|c1_g2_i3 | Leucine-rich repeat receptor-like serine/threonine-protein kinase FLS2 | 7.92E-65 | -5.4 | -6.7 |
| TR34848|c0_g2_i1 | Calcium-dependent protein kinase 17 | 1.25E-81 | 3.4 | - |
| TR6882|c0_g1_i1 | Calcium-dependent protein kinase 20 | 5.18E-76 | -6.1 | - |
| Stress protection | ||||
| TR10757|c0_g3_i1 | Chaperone protein ClpB1 | 7.43E-16 | 3.4 | - |
| TR35960|c0_g2_i2 | Proteasome assembly chaperone 2 | 4.89E-28 | 11.2 | - |
| TR41947|c0_g1_i3 | Chaperone protein DnaJ | 1.06E-10 | 3.9 | - |
| TR75210|c0_g1_i2 | Molecular chaperone Hsp31 | 1.57E-10 | 2.5 | 4.2 |
| TR39621|c0_g1_i2 | Glutathione S-transferase | 4.85E-53 | 2.9 | 5.0 |
| TR14048|c0_g1_i1 | Peroxisomal catalase | 0 | 3.7 | 6.7 |
| TR58823|c0_g2_i1 | Peroxiredoxin | 6.92E-54 | 2.3 | 3.4 |
| TR57779|c0_g1_i1 | Peptide methionine sulfoxide reductase | 4.35E-79 | 2.5 | 3.0 |
| TR35953|c0_g2_i4 | (Chloroquine-resistance transporter)-like transporter 3 | 7.29E-81 | 9.0 | - |
| TR50557|c0_g2_i12 | Nijmegen breakage syndrome 1 protein | 3.14E-13 | 9.5 | 9.7 |
| TR35997|c1_g1_i8 | DNA-damage-repair/toleration protein | 1.42E-42 | 3.0 | - |
| TR49464|c0_g1_i1 | Late embryogenesis abundant protein 4 (LEA4; AT3G53040) | 8.1E-19 | 5.1 | 3.6 |
| TR39628|c0_g2_i1 | Late embryogenesis abundant protein 4 (LEA4; AT2G18340) | 4.6E-24 | 5.0 | - |
| TR69744|c2_g23_i1 | Late embryogenesis abundant protein 4 (LEA4; AT4G36600) | 1.1E-14 | 5.3 | 3.4 |
| TR60896|c0_g1_i1 | Late embryogenesis abundant protein 5 (LEA5; AT2G40170) | 6.5E-27 | - | 9.8 |