Table 2.
Typical target genes identified through degradome sequencing.
| SmallRNA | SmallRNA_seq | Transcript | Transcript Annotation | KEGG_pathways | Alignment Score | Alignment Range | P-value |
|---|---|---|---|---|---|---|---|
| mdm-miR403a | TTAGATTCACGCACAAACTCG | XM_008373619.1 | Argonaute | – | 1 | 3231–3251 | 0.00E+00 |
| mdm-miR397a_L+1R+2_1ss22AG | ATTGAGTGCAGCGTTGATGAAGGT | XM_008365682.1 | Nitrite reductase (NO-forming) | ko00910(Nitrogen metabolism) | 2.5 | 738–760 | 0.00E+00 |
| mdm-miR172a_R+1_1 | AGAATCTTGATGATGCTGCAA | XM_008359912.1 | AP2-like factor, euAP2 lineage | – | 2 | 1715–1735 | 0.00E+00 |
| mdm-miR396c_R-2 | TTCCACAGCTTTCTTGAAC | XM_008372783.1 | E3 ubiquitin-protein ligase | ko04120(Ubiquitin mediated proteolysis); ko04144(Endocytosis) | 4 | 2420–2438 | 8.13E−42 |
| mdm-miR3627a_R-1 | TCGCAGGAGAGATGGCACT | XM_008393337.1 | Ca2+-transporting ATPase | – | 1.5 | 334–352 | 8.36E−76 |
| mdm-miR162a | TCGATAAACCTCTGCATCCAG | XM_008360618.1 | Endoribonuclease Dicer | – | 2 | 3720–3741 | 2.00E−31 |
| gma-MIR5368-p3_1ss3GA | CCAAGGGACAGTCTCAGGT | XM_008373238.1 | Autophagy-related protein 7 | ko04140(Regulation of autophagy) | 3 | 946–964 | 3.22E−20 |
| gma-MIR5368-p5_1ss2AT | GTGAGATACCACTCTGGA | XM_008360074.1 | Cellulose synthase A | – | 4 | 1825–1842 | 5.69E−09 |
| ppe-MIR172c-p5 | GCGGCATCATCAAGATTCAC | XM_008393540.1 | Monodehydroascorbate reductase | ko00053(Ascorbate and aldarate metabolism) | 4 | 518–536 | 1.92E−28 |
| PC-3p-202837_7 | AGGAATGTAAAATGAGATT | XM_008392258.1 | Pyruvate dehydrogenase kinase | – | 3.5 | 909–928 | 1.69E−19 |
| PC-3p-370429_4 | AGTGTAGAATGAGATTTTTTGAAG | XR_524420.1 | Glutathione S-transferase | ko00980(Metabolism of xenobiotics by cytochrome P450);ko00982(Drug metabolism - cytochrome P450) | 3 | 514–537 | 1.69E−08 |
| PC-5p-154495_9 | AGATGAATTTGAATTTTGAGATTT | XM_008355882.1 | ATP-binding cassette | ko02010 (ABC transporters) | 2.5 | 2608–2631 | 1.61E−29 |