Table 1.
Identification of NDV viral protein interacted with CG-1B by LC-MS/MS
| No. | Accession no.a | Ion scoresb | Mass | Matched peptidesc | Sequence coverage | Protein name |
|---|---|---|---|---|---|---|
| % | ||||||
| 1 | P35743 | 3762 | 63,854 | AVSQVALENDEREAK | 65 | HN OS = NDV (strain chicken/United States/LaSota/46) GN = HN PE = 3 SV = 1 |
| ISRAEEKITSTLGSNQDVVDRIYK | ||||||
| ELIVDDASDVTSFYPSAFQEHLNFIPAPTTGSGCTRIPSFDMSATHYCYTHNVILSGCRDHSHSYQYLALGVLR | ||||||
| VFFSTLRSINLDDTQNRKSCSVSATPLGCDMLCSKVTETEEEDYNSAVPTR | ||||||
| LGFDGQYHEKDLDVTTLFGDWVANYPGVGGGSFIDSRVWFSVYGGLKPNSPSDTVQEGKYVIYKR | ||||||
| SSYKPGR | ||||||
| RIQQAILSIKVSTSLGEDPVLTVPPNTVTLMGAEGRILTVGTSHFLYQR | ||||||
| TATLHSPYTFNAFTRPGSIPCQASAR | ||||||
| GVFGTMLDGVQARLNPASAVFDSTSR | ||||||
| AAYTTSTCFK | ||||||
| TYCLSIAEISNTLFGEFRIVPLLVEILKDDGVR | ||||||
| 2 | P12556 | 533 | 63,307 | ELIVDDASDVTSFYPSAFQEHLNFIPAPTTGSGCTR | 28 | HN OS = NDV (strain Italian/45) GN = HN PE = 3 SV = 1 |
| VFFSTLRSINLDDNQNR | ||||||
| LGFDGQYHEK | ||||||
| VWFPVYGGLKPNSPSDTAQEGR | ||||||
| SSYKPGR | ||||||
| RVQQAILSIK | ||||||
| GVFGTMLDDKQARLNPVSAVFDNISR | ||||||
| TYCLSIAEISNTLFGEFRIVPLLVEILKEDGV |
a Accession numbers are according to Uniprot database.
b Ion scores were from LC-MS/MS identification. Proteins with significant ion score of >21 (p < 0.05) were considered successfully identified.
c Peptides identified by LC-MS/MS matched the successfully identified protein.