Table 1. Summary of transcriptome data for sugarcane var. Mex 69–290.

	Number	Percentage (%)
Raw reads	412,440,102
Clean reads (Q>30)	410,382,788
Average of GC% content	48.18
Total aligned reads	361,376,210
Proper aligned pairs	243,487,632	67.38
Improper aligned pairs	86,259,650	23.87
Left only	17,107,872	4.73
Right only	14,521,056	4.02
Total transcripts	252,702
N50 length (Transcripts)	1,430
Total unigenes	140,339
N50 length (Unigenes)	1,213
Unigenes (300–1,000 nt)	63,273	45.08
Unigenes (1,001–3,000 nt)	20,673	14.73
Unigenes (3,001–10,000)	2,463	1.75
Unigenes (10,001 ≥)	16	0.01
Unigenes in Swiss-Prot database	19,211	13.68
Unigenes in TrEMBL database	38,798	27.63
Unigenes in Pfam database	29,212	20.8
Unigenes in CDD database	25,814	18.38
Unigenes in Plant ref-seq database	31,130	22.18
Unigenes in GO database	19,372	13.79