Table 1.
Genomic Branch | Phylogenomic species and representative strains | Nr of strains | ANIb | GGDC | 3 genes–MLSA | Core MLSA | ||||
---|---|---|---|---|---|---|---|---|---|---|
Minimal intra-cluster ANIb (%) | Closest inter-cluster ANIb (%) | Minimal intra-cluster GGDC (%) | Closest inter-cluster GGDC (%) | Minimal intra-cluster MLSA (%) | Closest inter-cluster MLSA (%) | Minimal intra-cluster Core (%) | Closest inter-cluster Core (%) | |||
I | P. congelans | 3 | 98.42 | 94.15 | 87.7 | 58.7 | 99.64 | 98.64 | 99.7 | 98.7 |
P. syringae | 9 | 94.79 | 95.15 | 68.4 | 62.8 | 98.75 | 98.39 | 98.8 | 98.9 | |
P. cerasi | 1 | – | 95.07 | – | 61.2 | – | 97.47 | – | 99 | |
Species A (strain B728a) | 2 | 98.27 | 95.21 | 87.6 | 62.8 | 99.25 | 98.96 | 99.6 | 98.9 | |
II | P. avellanae | 13 | 96.66 | 95.41 | 73.2 | 65 | 99.03 | 98.85 | 99.2 | 99.1 |
“P. tomato” (DC3000) | 7 | 98.41 | 95.41 | 89 | 65 | 99.35 | 98.85 | 99.7 | 99.1 | |
III | P.cannabina | 3 | 97.49 | 95.17 | 70.9 | 62.8 | 98.89 | 98.42 | 99.5 | 98.9 |
“P. coriandricola” (ICMP 12471) | 1 | – | 95.17 | – | 62.8 | – | 98.42 | – | 99 | |
species B (strain CC1583) | 2 | 98.91 | 89.53 | 90.9 | 38.8 | 99.71 | 96.81 | 99.7 | 97.5 | |
“P. coronafaciens” (LMG 5060) | 11 | 97.68 | 86.45 | 74 | 32.9 | 99.28 | 96.84 | 99.7 | 95.9 | |
IV | P. amygdali, P. meliae, P. savastanoi, P. ficuserectae | 57 | 96.79 | 89.2 | 76.4 | 39 | 97.45 | 97.54 | 98.8 | 98.1 |
P. caricapapayae | 3 | 97.3 | 89.38 | 78.8 | 39 | 98.97 | 97.49 | 99.5 | 98.1 | |
V | P. asturiensis | 1 | 100 | 94.63 | – | 59 | – | 98.57 | – | 98.8 |
species C (strain CC1417) | 2 | 99.05 | 94.63 | 92.7 | 59 | 99.64 | 98.57 | 99.9 | 98.8 | |
P.viridiflava | 7 | 96.39 | 86.69 | 71.6 | 32.8 | 98.24 | 95.2 | 99.6 | 96.8 | |
VI | P. cichorii | 2 | 99.94 | 81.35 | 100 | 23.6 | 100 | 92.26 | 100 | 91.3 |
species D (strain UB246) | 1 | – | 88.52 | – | 36.8 | – | 97.31 | – | 97.6 | |
P. caspiana | 1 | – | 88.52 | – | 32.6 | – | 96.31 | – | 97.5 | |
species E (strain S25) | 1 | – | 86.93 | – | 23.5 | – | 97.31 | – | 97.5 |
The representative strain for the unnamed phylogenomic species is indicated in brackets.