Table 4.

Estimates of heritability and variance components from LDA and LDLA analyses when using the GWAM chip with different composite relationship matrices

	LDA			LDLA
	$V_A$	$V_E$	$h^2$	$V_A$	$V_E$	h 2
$\mathrm{\lambda }=0$	54.94 (7.41)	104.54 (5.21)	0.34 (0.04)	57.26 (7.08)	103.78 (4.74)	0.36 (0.04)
$\mathrm{\lambda }=0.1$	68.43 (7.80)	92.25 (5.05)	0.43 (0.04)	64.25 (7.10)	96.25 (4.53)	0.40 (0.04)
$\mathrm{\lambda }=0.2$	66.53 (7.44)	92.06 (4.79)	0.42 (0.04)	62.13 (6.79)	96.13 (4.36)	0.39 (0.03)
$\mathrm{\lambda }=0.3$	63.53 (7.12)	93.59 (4.57)	0.40 (0.04)	59.61 (6.55)	97.14 (4.22)	0.38 (0.03)
$\mathrm{\lambda }=0.4$	60.60 (6.83)	95.62 (4.38)	0.39 (0.04)	57.31 (6.35)	98.54 (4.11)	0.37 (0.03)
$\mathrm{\lambda }=0.5$	57.84 (6.58)	97.88 (4.20)	0.37 (0.03)	55.23 (6.19)	100.15 (4.00)	0.36 (0.03)
$\mathrm{\lambda }=0.6$	55.23 (6.34)	100.27 (4.05)	0.36 (0.03)	53.28 (6.05)	101.93 (3.90)	0.34 (0.03)
$\mathrm{\lambda }=0.7$	52.66 (6.11)	102.78 (3.90)	0.34 (0.03)	51.34 (5.91)	103.89 (3.81)	0.33 (0.03)
$\mathrm{\lambda }=0.8$	49.99 (5.88)	105.46 (3.77)	0.32 (0.03)	49.22 (5.76)	106.09 (3.72)	0.32 (0.03)
$\mathrm{\lambda }=0.9$	46.94 (5.62)	108.39 (3.66)	0.30 (0.03)	46.64 (5.57)	108.64 (3.64)	0.30 (0.03)
$\mathrm{\lambda }=1$ (LD)	43.08 (5.28)	111.73 (3.57)	0.28 (0.03)	43.08 (5.28)	111.73 (3.57)	0.28 (0.03)

h ², heritability; V _A, additive genetic variance; V _E, error variance; SE, standard errors in brackets