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. 2017 Dec 12;7:17361. doi: 10.1038/s41598-017-17680-9

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© The Author(s) 2017

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Neighbour Net analysis of CLCuD associated begomoviruses generated in the present study along with GenBank sequences. Extensive network structures among the CLCuMuV sequences indicate considerably conflicting phylogenetic signals, suggesting widespread recombination within the sequences. CLCuMuV clade demarcations are according to a recent paper⁹. Begomovirus species names have been abbreviated according to the recent standard nomenclature⁵. Locations of the sequences generated in the present study (Punjab, India, 2015) are indicated by red arrowheads, while those isolated very recently from Vehari, Pakistan (2015)¹ are indicated by green arrowheads.