Table 3.
Statistical features of recombination events observed in complete DNA-β sequence analyzed in the present study.
| Recombination Event | Probable Breakpoints | Recombinant Sequence(s) | Parental Sequence(s) | P-value calculated by different recombination detection algorithms | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Begin | End | Minor | Major | RDP | GENECONV | Bootscan | Maxchi | Chimaera | SiSscan | 3Seq | ||
| R7 | 228 | 448/472* | KY081413 KY081414 | JX217745 (CLCuMuB) Indore, India, 2010 | KY800907 (CLCuMuB) Punjab, India, 2016 | 3.06E-04 | 2.64E-02 | NS | NS | NS | NS | 1.40E-02 |
| R8 | 1164 | 1259/1316* | KY081413 KY081414 | EU384596 (CLCuMuB) Multan, Pakistan, 2008 | AJ966244 (ToLCJoB) Gazipur, Bangladesh, 2003 | 1.38E-24 | 6.21E-26 | 4.16E-19 | 3.03E-05 | 1.14E-04 | 6.24E-06 | 2.02E-11 |
| R9 | 945 | 1189 | KY081414 | KX966003 (CLCuMuB) New Delhi, India, 2014 | HG983281 (TbLCuB) Yazman, Pakistan, 2013 | 3.57E-07 | 6.27E-08 | 1.36E-07 | NS | NS | 1.10E-13 | NS |
| R10 | 375 | 1095 | KY305676 | KM103522 (CLCuMuB) Sirsa, India, 2013 | KY081413 (CLCuMuB) Punjab, India, 2015 | 2.08E-07 | 5.98E-10 | 1.24E-06 | 3.45E-02 | 3.19E-02 | 1.35E-15 | 1.81E-05 |
*For KY081414.