TABLE 2 .
Annotation of core SNP loci from isolates of P. destructans from North America
| Accession no. | Position | Type | Variant isolate(s) | Protein ID no. | Product |
|---|---|---|---|---|---|
| KV441386.1 | 1202839 | UTRa | 20693-1_MA_2008 | OAF63413.1 | NAD synthase |
| KV441386.1 | 2276958 | Intergenic | 22948-1_TN_2010 | NAb | NA |
| KV441395.1 | 783753 | UTR | 22948-1_TN_2010 | OAF58958.1 | Hypothetical protein |
| KV441396.1 | 546602 | Intergenic | 23444-1_TN_2011 | NA | NA |
| KV441398.1 | 551631 | UTR | 23877-1_DE_2012 | OAF57976.1 | Hypothetical protein |
| KV441399.1 | 235966 | Intergenic | 23414-1W_IN_2011, 23434-1W_IN_2011 |
NA | NA |
| KV441400.1 | 640730 | UTR | 22442-2_NJ_2009 | OAF57273.1 | Hypothetical protein |
| KV441401.1 | 139816 | Intergenic | 22948-1_TN_2010 | NA | NA |
| KV441402.1 | 72139 | Intergenic | 23897-2_MO_2012 | NA | NA |
| KV441402.1 | 226767 | UTR | 22948-1_TN_2010 | OAF56852.1 | Hypothetical protein |
| KV441402.1 | 510412 | Intergenic | 20693-1_MA_2008 | NA | NA |
| KV441404.1 | 262446 | UTR | 22442-2_NJ_2009 | OAF56419.1 | Hypothetical protein |
| KV441387.1 | 430984 | Intergenic | 23874-1_ME_2012 | NA | NA |
| KV441387.1 | 820735 | UTR | 22426-2_CT_2009 | OAF62808.1 | Hypothetical protein |
| KV441387.1 | 1825781 | Intergenic | 22948-1_TN_2010 | NA | NA |
| KV441387.1 | 2082665 | UTR | 22442-2_NJ_2009 | OAF62574.1 | ESCRT-I complex subunit VPS28 |
| KV441387.1 | 685734 | Intergenic | 22442-2_NJ_2009 | NA | NA |
| KV441387.1 | 785423 | Intergenic | 23897-2_MO_2012 | NA | NA |
| KV441387.1 | 54855 | Intergenic | 22971-3_ON_2010 | NA | NA |
| KV441387.1 | 193542 | Intergenic | 22948-1_TN_2010 | NA | NA |
| KV441387.1 | 253155 | Intergenic | 22442-2_NJ_2009 | NA | NA |
| KV441387.1 | 77282 | Intergenic | 23455-1_VA_2011 | NA | NA |
| KV441387.1 | 120236 | Intergenic | 23897-2_MO_2012 | NA | NA |
| KV441388.1 | 775461 | Intragenic | 22972-2W_ON_2010 | OAF61744.1 | Hypothetical protein |
| KV441388.1 | 950597 | Intron | 23897-2_MO_2012 | OAF61915.1 | Hypothetical protein |
| KV441388.1 | 120202 | UTR | 22469-1_VA_2009 | OAF62044.1 | Hypothetical protein |
| KV441388.1 | 57283 | UTR | 20631-21_NY_2008 | OAF61813.1 | Hypothetical protein |
| KV441389.1 | 343287 | Intron | 23455-1_VA_2011 | OAF61688.1 | AGC/AKT protein kinase |
| KV441389.1 | 419134 | Intergenic | 23414-1W_IN_2011 | NA | NA |
| KV441389.1 | 867065 | UTR | 22004-1_CT_2008 | OAF61368.1 | Actin cytoskeleton-regulatory complex protein end3 |
| KV441389.1 | 1173430 | Intergenic | 22971-3_ON_2010 | NA | NA |
| KV441389.1 | 1173432 | Intergenic | 22971-3_ON_2010 | NA | NA |
| KV441389.1 | 50002 | UTR | 22948-1_TN_2010 | OAF61394.1 | Hypothetical protein |
| KV441390.1 | 643943 | Intergenic | 23897-2_MO_2012 | NA | NA |
| KV441390.1 | 659862 | UTR | 22948-1_TN_2010 | OAF61216.1 | Hypothetical protein |
| KV441390.1 | 861423 | UTR | 22948-1_TN_2010 | OAF60933.1 | Hypothetical protein |
| KV441390.1 | 1243398 | UTR | 23434-1W_IN_2011 | OAF60771.1 | Hypothetical protein |
| KV441390.1 | 1524359 | UTR | 22948-1_TN_2010 | OAF60872.1 | Hypothetical protein |
| KV441391.1 | 151986 | UTR | 20693-1_MA_2008 | OAF60366.1 | Hypothetical protein |
| KV441391.1 | 1184294 | Intergenic | 22442-2_NJ_2009 | NA | NA |
| KV441392.1 | 712894 | Intergenic | 23414-1W_IN_2011 | NA | NA |
a
UTR, untranslated region of exon.
b
NA, not available.