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. 2017 Dec 13;7:17540. doi: 10.1038/s41598-017-17345-7

Table 1.

Representation of other C1 carbon fixation pathways in the enumerated set.

Pathway rTCA Cycle Calvin-Benson-Bassham Cycle Wood-Ljungdahl Pathway Dicarboxylate/4-Hydroxy butyrate Cycle 3-Hydroxy propionate Bicycle 3-Hydroxy propionate/ 4- Hydroxy butyrate Cycle
Number of Intermediates 11 9 4 12 13 12
Intermediates Enumerated 11 3 3 6 9 5
Compounds Excluded None Erythrose1 Methanol1 Enol pyruvate3 Propionic acid1,4 Acrylic acid4
Ribose1 Succinic semialdehyde1,4 Methylmalic acid1 Propionic acid1,4
Ribulose1 Crotonic acid1,4 Mesaconic acid4 Crotonic acid1,4
Xylulose1 Acetoacetic acid1,4 Citramalic acid1 Acetoacetic acid1,4
Fructose1 3-Hydroxy butyric acid1,4 Succinic semialdehyde1,4
Sedoheptulose1,2 4-Hydroxy butyric acid1,4 4-Hydroxybutyric acid1,4
4-Hydroxy butyric acid1,4

The reasons for their exclusion are given as superscripts in the table and annotated here: 1. H/O ratio violation; 2. C atom number violation; 3. disallowed enol tautomer; 4. C/O ratio violation.