Figure 5.

Graphical Display and mRNA Expression Patterns of Smaller Modules IX and X as Well as Unconnected Baits in the Plastid and Mitochondrial Peptidase Coexpression Network Based on the Edge List in Supplemental Data Set 4A.

Coexpression modules IX (A) and X (C). (B) shows that mRNA levels of several of the baits in module IX are strongly upregulated during heat stress. Data and image are generated from BAR. (D) shows the coexpressors of two baits just connected by one shared coexpressor (#305) and eight baits that are not connected to other baits. Color coding of baits in the main proteolytic systems and the annotated subcellular localization, as well as annotated functions for coexpressors, are provided. The edges are colored according to the subcellular localization of the coexpressor (green, plastid; yellow, mitochondria; dark blue, dual-targeted plastid/mitochondria; light blue, cytosol; purple, secreted; gray, other). Names of selected baits with their network id and subcellular location are indicated (p, plastid; p-e, plastid envelope; m, mitochondria; p/m, dual-targeted plastid/mitochondria). Noteworthy enrichment for functional or localization in modules is indicated in blue. (A higher-resolution copy of this figure is presented as Supplemental Figure 4.)