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The prevalence of repeat motifs utilized in SD-MMEJ consistent deletion junctions depends on the I-SceI flanking sequence. Repeat motifs contain the P1 primer repeat, the adjacent MH1 microhomology repeat, and any intervening sequence. Colors correspond to the frequency that each base is found in a repeat motif, with warmer colors indicating greater frequencies. Red vertical lines indicate the TTAT/AATA overhangs produced by I-SceI cutting.
