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. 2017 Dec 14;8:21. doi: 10.1186/s13100-017-0104-1

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© The Author(s). 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — Passerine SINEs share a common ancestor and are mobilized by CR1-X. a Maximum likelihood phylogeny of passerine SINE tails and avian CR1 subfamilies in Repbase [58] (GTRCAT model, 1000 bootstrap replicates) suggests that TguSINE1 and PittSINE arose from the same CR1-X subfamily (CR1-X1_Pass) and share a common SINE ancestor. Note that the topology of the CR1 phylogeny is identical to that of previous studies [20, 32]. b Comparison of the TguSINE1 landscape with landscapes of CR1 families (merged subfamilies from panel A) suggests temporal overlap of TguSINE1 and CR1-X activity in the zebra finch genome. RE landscapes were generated using the zebra finch assembly taeGut2 following methods detailed elsewhere [32]