Table 1.

Additional VCF information fields. After running pyAmpli a new VCF is generated with additional INFO fields. These fields provide the user information on amplicon fractions, counts and offsets of reference and alternative alleles

INFO ID	Description
AmpFR	Amplicon fraction for reference allele
AmpFA	Amplicon fraction for alternative allele
AmpCR	Amplicon count for reference allele
AmpCA	Amplicon count for alternative allele
AmpC	Amplicon total count
AmpF_OA	Amplicon count offset compared to allelic depth, for alternative allele
AmpF_OR	Amplicon count offset compared to allelic depth, for reference allele