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. 2017 Nov 14;3(11):e000139. doi: 10.1099/mgen.0.000139

Fig. 2.

Fig. 2.

MP phylogenetic analysis of Australian ST-149 isolates, reconstructed using SNPs identified from comparative genomic analysis (reference genome: MSHR4300). (a) Based on 416 SNPs identified among the four ST-149 isolates, 404 SNPs separate the two environmental isolates, MSHR4300 and MSHR0503. (b) Post-Gubbins analysis to filter out recombinogenic SNPs shows an identical topology based on 175 SNPs, of which 165 SNPs separate MSHR4300 and MSHR0503. Consistency index for both trees=1.