Abstract
Regulated exocytosis by secretory organelles is important for malaria parasite invasion and egress. Many parasite effector proteins, including perforins, adhesins, and proteases, are extensively proteolytically processed both pre- and post-exocytosis. Here, we report the multi-stage anti-plasmodial activity of the aspartic protease inhibitor hydroxyl-ethyl-amine-based scaffold compound, 49c. This scaffold inhibits the pre-exocytosis processing of several secreted rhoptry and microneme proteins by targeting the corresponding maturases plasmepsins IX (PfPMIX) and X (PfPMX), respectively. Conditional excision of PfPMIX revealed its crucial role in invasion, and recombinantly active PfPMIX and PfPMX cleave egress and invasion factors in a 49c sensitive manner.
Keywords: Malaria, Plasmodium falciparum, Plasmodium berghei, aspartic protease, invasion, egress, exflagellation, transmission, hydroxyl-ethyl-amine scaffold, peptidomimetic inhibitor, protein maturase
Malaria remains a major cause of mortality worldwide, and resistance to existing antimalarials is a growing problem, that requires the development of new drugs urgently. Aspartic proteases are potential targets for chemotherapy (1), and key contributors to Plasmodium falciparum pathogenicity (2, 3). P. falciparum possesses a repertoire of 10 aspartic proteases, named plasmepsins (PMI to X). PMIX and PMX are expressed in mature blood-stage schizonts and invasive merozoites and fulfill indispensable but unknown functions. The activity of several serine and cysteine proteases promotes the destabilization of the parasitophorous vacuole membrane (PVM) and red blood cell (RBC) membranes which surround the parasite (4). Egress is followed by invasion of a fresh RBC, a process that takes 10-30 s. Invasion also crucially relies on serine proteases to activate or remove ligands involved in interactions with the host erythrocyte (5).
To study the role of aspartic proteases during egress and invasion, we used a hydroxyl-ethyl-amine scaffold that inhibits aspartic proteases by mimicking the tetrahedral intermediate of hydrolysis (6). Compound 49c (Fig. 1A) is such a peptidomimetic competitive inhibitor and has been found to be effective against P. falciparum in vitro and the rodent parasite Plasmodium berghei in vivo (7, 8). This compound has a modest effect after 24 hours treatment (IC50 > 500 nM) and a significantly greater effect after 72 hours (IC50 0.6 nM), indicating inhibition occurs at a specific life-cycle stage. P. falciparum cultures treated at ring stage with 1 nM 49c showed no difference compared to controls during the first 24 hours, contrasting with a total disappearance of the parasites after three days (Fig. 1B). The killing profile of 49c is comparable to chloroquine (CQ), with a 99.9% parasite clearance (9) achieved at 48 hours of treatment (Fig. 1C). Importantly, 49c did not affect intraerythrocytic development and allowed the production of microscopically normal schizonts that were, however, not released from the host cell (Fig. 1D). Treatment 5 hours prior to egress was sufficient to inhibit egress, whereas treatment for 3 hours had no significant effect (Fig. 1E). Removal of 49c 1 hour prior to egress did not release the block, whereas washing it out 5 hours before egress totally rescued the phenotype (Fig. 1F), confirming that 49c acts during late schizogony to block egress but does not prevent intra-erythrocytic development.
Plasmodium egress from infected red blood cells (iRBCs) is a two-step process, initiated by the disruption of the PVM followed by the erythrocyte membrane. These two steps require the serine protease PfSUB1 (10, 11), which undergoes at least two proteolytic processing events during its maturation to produce the mature p47 form (Fig. 1G) (12). Treatment of parasites with 10 nM 49c prevented the p54-to-p47 transition, while 1 nM 49c resulted in traces of mature p47 PfSUB1 (Fig. 1G-H). 49c had no impact on the trafficking and secretion of PfSUB1 from exonemes as no difference was observed comparing 49c-treated and control egressing schizonts (Fig. S1A) and did not inhibit the enzymatic activity of recombinant PfSUB1 in vitro (Fig. S1B). PfSUB1 governs egress by processing the merozoite surface protein PfMSP1 (11) and SERA family proteins in the PV (Fig. S1I) (13). Both PfMSP1 and PfSERA5 remained unprocessed in parasites treated with 49c, indicating that PfSUB1 was inactive (Fig. S1C-E). We visualized the effect of 49c on PVM breakdown, using parasites expressing a GFP fusion of the soluble PV protein PfPVI (PfPVI-GFP) (14). When the PVM ruptures, pores form in the iRBC membrane, leading to the disappearance of the GFP signal (15). In control parasites, the extremely short period between PVM rupture and egress could not be observed. In contrast, parasites treated with 1 nM 49c were able to break the PVM but remained trapped within the RBCs, while 10 nM 49c completely blocked PVM rupture (Fig. S1F). These results were confirmed by transmission electron microscopy (EM) (Fig. 1I).
We assessed the impact of 49c on erythrocyte invasion by mechanically releasing merozoites (16). Treatment with 49c >5 hours impaired invasion, whereas a 1-hour treatment had no significant impact (Fig. 1J). Invasion critically relies on the formation of a moving junction composed of the apical membrane antigen-1 (PfAMA1) and rhoptry proteins (PfRONs) (17). PfAMA1 (18) is a microneme, integral membrane protein, which is processed by the action of an unknown protease at its N-terminus to generate the secreted p66 form from a p83 precursor (Fig. S1G). This event occurs prior to exocytosis and appears to be a prerequisite for PfAMA1 secretion (19). Consistently, 49c abrogated the processing of PfAMA1, resulting in accumulation of the p83 precursor (Fig. 1K) without impacting PfAMA1 trafficking to the micronemes (Fig. S1H).
Within erythrocytic stages, PMIX and PMX are predominantly expressed at the schizont stage, suggesting a role in egress and/or invasion and implicating them as plausible targets for 49c (Fig. S2A) (20). PMIX and PMX appeared to be refractory to genetic ablation in both P. falciparum and P. berghei (21). We therefore opted for conditional expression systems, DiCre (22) for PfPMIX and the auxin-inducible degron approach (23) for PbPMIX and PbPMX. The P. berghei inducible knockdowns showed only low levels of protein destabilization (Fig. S3A-B). We modified the PfPMIX locus to insert loxP sites and a C-terminal epitope tag in DiCre expressing parasites (22) (Fig. S4A-B). PfPMIX-Ty only partially co-localised with PfCyRPA and PfRhopH3 but not with PfAMA1 (Fig. 2A). The localization at the proximity of the rhoptries was confirmed by immune electron microscopy (Fig. S4C-D) and is concordant with transcriptomes information from indicating expression prior to secretory organelle proteins (24). Induction of DiCre activity by rapamycin led to the complete disappearance of PfPMIX (Fig. 2B). PfPMIX-deficient parasites became undetectable three days after rapamycin treatment (Fig. 2C). In the absence of PfPMIX, intracellular development occurred normally until the schizont stage (Fig. 2D). Consistent with its expression in schizonts (Fig. S2A), ring-stage parasites were significantly reduced by the second cycle after rapamycin treatment showing a severe default in invasion. This decline in erythrocyte invasion was more pronounced when the samples were treated with trypsin to remove non-invasive adherent merozoites from the host cell surface (Fig. 2E). Any delay in the egress process results in non-invasive merozoites, probably due to the exhaustion of their secreted protein set (16). The replication defect in parasites lacking PfPMIX did not result from impaired egress (25), as time-lapse video-microscopy (11) did not reveal delayed egress (Fig. S4C and Movies S1 and S2), confirming that PfPMIX is essential for invasion only.
We identified the rhoptry associated protein 1 (PfRAP1) and the apical sushi protein (PfASP) as substrates of PfPMIX. Both proteins are targeted to the rhoptry and are extensively processed during their maturation (26, 27). PfRAP1 is converted from a short-lived, 86-kDa precursor into an 82 kDa (p82) form which is then converted to a 67 kDa (p67) form during schizont maturation (28). Importantly, the p86 precursor accumulated in the absence of PfPMIX, as well as upon treatment with 100 nM and 1 µM 49c, suggesting that 49c targets PfPMIX (Fig. 2 F) but apparently less potently than the protease responsible for PfSUB1 activation (Fig. 1 F). PfASP processing was also impaired in PfPMIX-KD parasites and a 1nM treatment 49c resulted in similar inhibition (Fig. 2G). A difference in 49c activity against various substrates of PfPMIX is not unexpected as 49c acts as a peptidomimetic competitive inhibitor (6).
To ensure that both rhoptry proteins represent direct substrates of PfPMIX, we expressed recombinant active (rPfPMIX, rPfPMX) as well as the catalytically dead mutants (rPfPMIX D/A, rPfPMX D/A) in baculovirus-infected insect cells. Both rPfPMIX and rPfPMX were active against the Toxoplasma gondii ROP1 peptide (29) and sensitive to 49c (Fig. S5A-D). Remarkably, rPfPMIX but not rPfPMIX D/A or rPfPMX showed activity on PfRAP-derived peptide but not on a mutant peptide and was inhibited by 1 μM 49c (Fig. 2H). Concordantly rPfPMIX was active against PfRAP1 immunoprecipitated from PfPMIX-KD parasites Fig. S6A). Similarly, PfASP purified from PfPMIX-KD parasite supernatant was efficiently processed by rPfPMIX but not when 1μM 49c was added to the assay or with rPfPMX D/A or rPfPMX (Fig. S6B).
The reticulocyte-binding homolog 5 (PfRh5) binds to erythrocyte basigin and is essential for merozoite invasion (30) and acts in concert with PfRipr and PfCyRPA (31) as well as Pfp113 (32). While PfRh5, PfRipr and Pfp113 are processed and released normally in the absence of PfPMIX, very little PfCyRPA is detectable in the supernatant during egress (Fig. S6C-E). CyRPA is not known to be processed, and the defect observed in PfCyRPA release remains unexplained but might contribute to loss of invasiveness in the absence of PfPMIX.
Since PfAMA1, PfSUB1, PfSERA5, and PfMSP1 are processed normally in the absence of PfPMIX but not upon 49c treatment (Fig. S6C-E), we hypothesized that PfPMX is responsible for the maturation of PfAMA1 and PfSUB1, We were, however, unable to conditionally knock-down PfPMX expression in either P. falciparum or P. berghei (Fig. S3A, B). Instead, we show that rPfPMX cleaves in vitro fluorogenic peptides corresponding to the PfAMA1 p83-to-p66 (33) (Fig. 2I) and to PfSUB1 p54-to-p47 cleavage sites (Fig. 2J), as well as the recombinant PvSUB1 (Fig. S6F). Importantly, 49c inhibited rPfPMX activity in vitro validating PfAMA1 and PfSUB1 as substrates for PfPMX. Decisively 49c dually targets PfPMIX and PfPMX and hence provides a rationale for the failure to isolate resistant parasites (Fig. S6H).
The antiplasmodial activity of 49c in vivo was characterized using the rodent model P. berghei. Based on the pharmacokinetics of 49c in mice (Fig. S7A), we opted for intraperitoneal (ip) injection of 100 mg/kg 49c that sustained blood concentrations higher than 0.2 µM over a 24 hours window. Daily treatment for 4 days cleared parasites from peripheral blood (Fig. 3A and B). Following initial treatment, circulating schizonts accumulated in the blood, confirming that 49c also blocked P. berghei egress from RBCs (Fig. 3C and Fig. S7B). No parasites were detectable after 2 weeks of treatment.
Transmission is mediated by an obligatory sexual life cycle phase (Fig. S7D), and drugs blocking transmission to the mosquito vector are potentially valuable for malaria eradication. Although 49c did not affect differentiation from asexual stages into microscopically mature gametocytes (Fig. 3C), it prevented further development into fertile gametes. Upon mosquito ingestion, each male gametocyte differentiates into eight sperm-like microgametes that are released in a process termed exflagellation. A 48-hour treatment with 49c led to a 10-fold decrease in exflagellation (Fig. 3D) and prevented the lysis of the RBC membranes surrounding both male and female parasites (Fig. 3E). Both PbPMX and its substrate PbSUB1 are expressed in mature gametocytes while PbPMIX could not be detected in these stages (Fig. 3F and G). Consistently, a 48-hour treatment with 49c strongly reduced PbSUB1 processing pointing to a conserved proteolytic cascade required for the egress of both asexual and sexual erythrocytic stages. Treatment at the time of gametogenesis activation had no effect on exflagellation, indicating that PMX activity is required for parasite egress during gametocytogenesis prior to mosquito ingestion (Fig. 3H).
Egress of gametes from the host erythrocyte is followed by fertilization. Within 24 hours, zygotes transform into ookinetes, which colonize the epithelial monolayer of the mosquito midgut. 49c treatment during in vivo gametocytogenesis completely blocked ookinete formation (Fig. 3I). Conversely, treatment at the onset of gametogenesis did not prevent the development of ookinetes (Fig. 3J). We were not able to detect PbSUB1 in ookinetes but 49c inhibited processing of the micronemal protein PbCelTOS that occurs during the late stages of ookinete development (Fig. 3K). PbCelTOS is crucial for ookinetes to traverse host cells into the site of oocyst development (34). Similar to gametocytes, PbPMX but not PbPMIX was detected in ookinetes (Fig. 3F) and, in vitro assays revealed that rPfPMX cleaved immunoprecipitated PbCelTOS-HA (Fig. 3L). In light of the potent inhibitory effect of 49c on gametogenesis and ookinete biology, we assessed the transmission blocking potential of 49c in vivo. A single treatment of infected mice 30 hours before blood meal completely blocked oocyst formation in the midgut of Anopheles mosquitoes (Fig. 3M and N).
Several studies have highlighted the commonalities between the blood and hepatic stages with regard to egress and invasion strategies as illustrated for SUB1 (13, 35, 36) and AMA1 (37), respectively. The effects of 49c on hepatic stage development with the focus on egress of P. berghei were examined using HeLa as well as HepG2 cells infected with mCherry-expressing P. berghei sporozoites. 49c added 2 hours post infection neither affected the number of infected cells (Fig. S8A, E and F) nor the size of intrahepatic parasites in vitro after 48 hours (Fig. S8B G and H). Infected cells detach upon rupture of the PVM, which typically occurs between 55 and 60 hours post infection (38). 49c led to a dramatic reduction of detached cells at doses as low as 6 nM, and no detached cells at all in the presence of 25 nM 49c (Fig. 4A and S8C-D). Merozoite development was normal, but progression to detached cells was hampered, resulting in accumulation of merozoite stage parasites at the time of cell detachment (Fig. 4B). Staining with MSP1, a marker for successful liver stage development, confirmed that 49c does not affect merozoite development (Fig. 4B and 4C). An in vivo time-course experiment was conducted with mice infected with luciferase-expressing P. berghei sporozoites and either treated twice with 100 mg/kg 49c, or left untreated (Fig 4D). The livers of drug-treated and control infected mice were comparably infected at 44 hours post infection, as revealed by bioluminescence imaging. Control mice exhibited the typical disappearance of signal from the liver after 55 hours and the concomitant appearance in blood after 65 hours (Fig. 4E). The liver load was prolonged in the presence of 49c, likely due to impaired egress, and blood stage development was strongly delayed, as analyzed by FACS in the blood of infected animals (Fig. 4F). 49c treatment had a strong effect on the establishment of blood stage parasites, although, at the administered doses, a complete block was not achieved.
Curative and preventive strategies for malaria treatment should ideally target three malarial life cycle stages: exoerythrocytic forms, the asexual blood stages, and the transmission stages. Here, we show that the pleiotropic plasmepsin inhibitor 49c inhibits malarial PMIX and PMX, resulting in a block in blood stage parasite egress and invasion as well as hepatic stage egress and transmission. Taken together PMIX and PMX qualify as very promising dual targets toward malaria eradication.
Supplementary Material
One Sentence Summary.
An aspartic protease inhibitor targeting plasmepsins IX and X acts as an antiplasmodial compound blocking infection and transmission at subnanomolar concentrations.
Acknowledgments
We are grateful to Dr. C. Boss (Actelion Pharmaceuticals Ltd) and Dr. S. Wittlin for providing us the initial 49c stock and for their help with the chemical synthesis. We thank Dr. G. Wright, Dr. M. Lebrun, Dr. D. Gaur and Dr. A. Cowman for the gift of numerous antibodies. We are grateful to Dr. O. Billker for the gift of Compound 2, and F. Hackett, J. B. Marq, and Ju Xu for their technical assistance. We thank the excellent service at the Biocenter Oulu Mass Spectrometry Core Facility. We would like to thank the PlasmoGEM team (Wellcome Trust Sanger Institute) for providing the PlasmoGEM vectors. We would like to thank the Netherlands Cancer Institute (NKI) Protein Facility for provision of the LIC vector and the Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO) for financial support to the facility (grant nr. 175.010.2007.012).
This work was funded by Carigest SA (DSF), the Swiss National Foundation (Grant 156825 to PP, 310030B_166678 to DSF, 310030_159519 to VH and BSSGI0_155852 to MB), SystemsX.ch (51TRPO_151032, VH and DSF), and the Academy of Finland (257537 and 292718 to IK). Funding to MJB was from the Francis Crick Institute (https://www.crick.ac.uk/) and Wellcome ISSF2 funding to the London School of Hygiene & Tropical Medicine.
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