REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Mouse monoclonal anti-p53 (clone DO-1) | Santa Cruz Biotechnology | Cat#sc-126; RRID: AB_628082 |
Mouse monoclonal anti-MDM2 (clone D-12) | Santa Cruz Biotechnology | Cat#sc-5304; RRID: AB_627918 |
Mouse monoclonal anti-Bcl-2 (clone C-2) | Santa Cruz Biotechnology | Cat#sc-7382; RRID: AB_626736 |
Rabbit polyclonal anti-Mcl-1 (clone S-19) | Santa Cruz Biotechnology | Cat#sc-819; RRID: AB_2144105 |
Rabbit polyclonal anti-Puma (clone H-136) | Santa Cruz Biotechnology | Cat#sc-28226; RRID: AB_2064827 |
Mouse monoclonal anti-ERK (cloned D-2) | Santa Cruz Biotechnology | Cat#sc-1647; RRID: AB_627547 |
Mouse monoclonal anti-N-Ras (clone F-155) | Santa Cruz Biotechnology | Cat#sc-31; RRID: AB_628041 |
Mouse monoclonal anti-GSK3 (clone 0011-A) | Santa Cruz Biotechnology | Cat#sc-7291; RRID: AB_2279451 |
Rabbit polyclonal anti-PARP-1 | Cell Signaling Technology | Cat#9542; RRID: AB_2160739 |
Rabbit polyclonal anti-Bim | Cell Signaling Technology | Cat#2819; RRID: AB_10692515 |
Rabbit monoclonal anti-Bak (clone D4E4) | Cell Signaling Technology | Cat#12105 |
Rabbit monoclonal anti-cleaved caspase-3 (D175) (clone 5A1E) | Cell Signaling Technology | Cat#9664; RRID: AB_2070042 |
Mouse monoclonal anti-caspase-9 (clone C9) | Cell Signaling Technology | Cat#9508; RRID: AB_10695598 |
Rabbit monoclonal anti-pMcl-1 (T163) (clone D5M9D) | Cell Signaling Technology | Cat#14765 |
Rabbit monoclonal anti-B-Raf (clone 55C6) | Cell Signaling Technology | Cat#9433; RRID: AB_ 2259354 |
Rabbit polyclonal anti-pB-Raf (S445) | Cell Signaling Technology | Cat#2696; RRID: AB_390721 |
Rabbit polyclonal anti-JNK | Cell Signaling Technology | Cat#9252; RRID: AB_2250373 |
Mouse monoclonal anti-pJNK (T183Y185) (clone G9) | Cell Signaling Technology | Cat#9255; RRID: AB_2307321 |
Rabbit polyclonal anti-Ubiquitin | Cell Signaling Technology | Cat#3933; RRID: AB_2180538 |
Rabbit monoclonal anti-pERK (T202/Y204) (clone D13.14.4E) | Cell Signaling Technology | Cat#4370; RRID: AB_2315112 |
Rabbit polyclonal anti-pMEK (S217/S221) | Cell Signaling Technology | Cat#9121; RRID: AB_331648 |
Mouse monoclonal anti-MEK (clone L38C12) | Cell Signaling Technology | Cat#4694; RRID: AB_10695868 |
Mouse monoclonal anti-AKT (clone 40D4) | Cell Signaling Technology | Cat#2920; RRID: AB_1147620 |
Rabbit polyclonal anti-pAKT(S473) | Cell Signaling Technology | Cat#9271; RRID: AB_329825 |
Rabbit monoclonal anti-pGSK3 (S21/S9) (clone D17D2) | Cell Signaling Technology | Cat#8566; RRID: AB_10860069 |
Mouse monoclonal anti-Bax (clone 2D2) | Sigma-Aldrich | Cat#B8554; RRID: AB_258645 |
Mouse monoclonal anti-β-Actin (clone AC-74) | Sigma-Aldrich | Cat#A2228; RRID: AB_476697 |
Mouse monoclonal anti-Noxa (clone 114C307) | Abcam | Cat#ab13654; RRID: AB_300536 |
Rabbit polyclonal anti-pMcl-1 (S159) | Abcam | Cat#ab111574; RRID: AB_10865697 |
Mouse monoclonal anti-p21WAF1 (clone EA10) | EMD Millipore | Cat#OP64; RRID: AB_2335868 |
IRDye® 680RD Donkey anti-Rabbit IgG (H + L) | Li-COR Biosciences | Cat#925-68073 |
IRDye® 800CW Donkey anti-Mouse IgG (H + L) | Li-COR Biosciences | Cat#925-32212 |
Mouse monoclonal anti-human CD45 (clone PD7/26 + 2B11) | DAKO | Cat#M0701; RRID: AB_2314143 |
Mouse monoclonal anti-human CD45-PE (clone HI30) | BD Biosciences | Cat#555483; RRID: AB_395875 |
Rat monoclonal anti-mouse CD45-APC (clone 30-F11) | BD Biosciences | Cat#559864; RRID: AB_398672 |
Chemicals, Peptides, and Recombinant Proteins | ||
RG7388 (idasanutlin) | Roche/Genentech | N/A |
ABT-199 (venetoclax/GDC-0199) | AbbVie | N/A |
A-1210477 | AbbVie | N/A |
Annexin V, FITC conjugate | BD Biosciences | Cat#556419 |
Annexin V, APC conjugate | BD Biosciences | Cat#550474 |
Annexin V, Alexa Fluor 488 conjugate | Thermo Fisher | Cat#A13201 |
D-Luciferin Firefly Potassium Salt | Gold Biotechnology | Cat#LUCK-1G CAS#115144-35-9 |
Protease/Phosphatase Inhibitor Cocktail (100X) | Cell signaling | Cat#5872 |
PD0325901 | Selleckchem | Cat#S1036 |
Trametinib | Selleckchem | Cat#S2673 |
Binimetinib | Selleckchem | Cat#S7007 |
CHIR-99021 | Selleckchem | Cat#S1263 |
Bortezomib | Selleckchem | Cat#S1013 |
Ixazomib | Selleckchem | Cat#S2180 |
BIO-Acetoxime | Selleckchem | Cat#S7915 |
MK-2206 2HCl | Selleckchem | Cat#S1078 |
Critical Commercial Assays | ||
Click-iT EdU Alexa Fluor 647 Imaging Kit | Thermo Fisher | Cat#C10340 |
FxCycle PI/RNase Staining Solution | Thermo Fisher | Cat#F10797 |
Q5 Site-Directed Mutagenesis Kit | New England BioLabs | Cat#E0554S |
Q5 Hot Start High-Fidelity 2X Master Mix | New England BioLabs | Cat#M0494S |
jetPRIME Versatile Transfection Reagent | Polyplus | Cat#114-15 |
Accell siRNA Delivery Media | Dharmacon | Cat#B-005000-500 |
QIAprep Spin Miniprep Kit | QIAGEN | Cat#27104 |
Wizard® SV Gel and PCR Clean-Up System | Promega | Cat#A9281 |
Experimental Models: Cell Lines | ||
Human: OCI-AML3 | DSMZ | Cat#ACC-582; RRID: CVCL_1844 |
Human: MV-4-11 | ATCC | Cat#CRL-9591; RRID: CVCL_0064 |
Human: MOLM-13 | DSMZ | Cat#ACC-554; RRID: CVCL_2119 |
Human: HL-60 | ATCC | Cat#CCL-240; RRID: CVCL_0002 |
Human: KG1 | ATCC | Cat#CCL-246; RRID: CVCL_0374 |
Human: THP1 | ATCC | Cat#TIB-202; RRID: CVCL_0006 |
Human: HEK293T | ATCC | Cat#CRL-3216; RRID:CVCL_0063 |
Experimental Models: Organisms/Strains | ||
Mice: NOD.Cg-PrkdcscidIl2rgtm1Wjl/SzJ | The Jackson Laboratory | Strain: 005557; RRID: IMSR_JAX:005557 |
Oligonucleotides | ||
pLKO.1-TRC shRNA negative control: ccgcaggtatgcacgcgt | Moffat et al., 2006 A gift from David Root | Addgene Plasmid #10879 |
pMKO.1 puro p53 shRNA 2: gactccagtggtaatctacttcaagagagtagattacactggagtcttttt | Masutomi et al., 2003 A gift from William Hahn | Addgene Plasmid #10672 |
shRNA targeting human MCL1: ccggtgtgaattcatgggctcatcttcaagagagatgagcccatgaattcacttttttgg | This paper | N/A |
TRC lentiviral human CDKN1A shRNA: ccagcactcttaggaacctct (#1) | Dharmacon | Cat#RHS3979-200795837 Clone ID: TRCN0000010401 |
TRC lentiviral human CDKN1A shRNA: taaggcagaagatgtagagcg (#2) | Dharmacon | Cat#RHS3979-201789662 Clone ID: TRCN0000040123 |
Accell siRNA non-targeting control pool | Dharmacon | Cat#D-001910-10 |
Accell MAPK1 siRNA SMART pool | Dharmacon | Cat#E-003555-00 |
Accell MAPK3 siRNA SMART pool | Dharmacon | Cat#E-003592-00 |
Accell GSK3B siRNA SMART pool | Dharmacon | Cat#E-003010-00 |
Accell GSK3A siRNA SMART pool | Dharmacon | Cat#E-003009-00 |
Recombinant DNA | ||
pCDH-EF1-MCS-BGH-PGK-GFP-T2A-Puro | System Biosciences | Cat#CD550A-1 |
pLKO.1 Vector | Moffat et al., 2006 | Addgene Plasmid #10878 |
psPAX2 Plasmid | A gift from Didier Trono | Addgene Plasmid #12260 |
pMD2.G Plasmid | A gift from Didier Trono | Addgene Plasmid #12259 |
Software and Algorithms | ||
Image Studio Lite Software | LI-COR Biosciences | https://www.licor.com/bio/products/software/image_studio_lite/ |
Prism Software v6.0 | GraphPad Software | https://www.graphpad.com/scientific-software/prism/ |
CalcuSyn 2.0 Software | Biosoft | http://www.biosoft.com/w/calcusyn.htm |
Kaluza Analysis Software 1.3 | Beckman Coulter | https://www.beckman.com/coulter-flow-cytometers/software/kaluza |
CellSens Software | OLYMPUS | https://www.olympus-lifescience.com/en/software/cellsens/ |
Other | ||
CountBright™ Absolute Counting Beads | Thermo Fisher Scientific | Cat#C36950 |
Xenogen IVIS-200 In Vivo Imaging System | PerkinElmer | N/A |
Odyssey Infrared Imaging System | LI-COR | N/A |
BX43 Upright Microscope with DP72 Digital Color Camera | OLYMPUS | N/A |
Vi-CELL XR Viability Analyzer | Beckman Coulter | Mode# 731050 |
Gallios 10 Colors/3 Lasers Flow Cytometer (561 with Kaluza Acquisition Software) | Beckman Coulter | Mode# B43618 |