Table 3.
Characteristics of Mlig_RNA_3_7_DV.v1 transcriptome assembly
| Transcriptional units | Genes | |
|---|---|---|
| Number of transcripts | 66,777 | 72,846 |
| Total length | 206 Mb | 182 Mb |
| Number of non-redundant sequencesa | 33,715 | 44,328 |
| Total length of non-redundant sequencesb | 127 Mb | 133 Mb |
| Average transcript length | 3.8 kb | 3.0 kb |
| Shortest transcript | 104 nt | 151 nt |
| Longest transcript | 51,585 nt | 47,797 nt |
| Transcripts with single trans-splicing site | 18,894 (28.29%) | 28,273 (38.81%) |
| Transcripts with multiple trans-splicing sites | 4,596 (6.88%) | — |
| Transcripts with defined poly(A) site | 52,707 (78.93%) | 58,259 (79.98%) |
| TransRate score | 0.4360 | 0.4797 |
| Average gene length | 9.4 kb | 7.5 kb |
| Average number of introns per gene | 5.0 | 4.9 |
| Average intron length | 1.4 kb | 1.1 kb |
| Human homolog genes | — | 8006 |
| PFAM domains | — | 5819 |
| Eukaryotic BUSCOs (n = 303) | ||
| Complete | — | 98.1% |
| Fragmented | — | 1.0% |
| Missing | — | 0.9% |
aSequences with ≥ 95% identity at nucleotide level
bSequences with 100% amino acid identity of ORFs