TABLE 4.

Characterization and expression patterns of significantly expressed proviruses

Provirus	LTRs	Mode of transcription	Impacting host gene encoding:	Cell line expression
				Hcc 1954	HMLE-Ras	HMLE-Her2	HME
Antisense-transcribed proviruses
3q21.2a	5′/Δ3′	Read-through	Repetitive element	+	+		+
7q34	Δ5′	Read-through	SSBP1	+	+		+
8p23.1b	5′/3′	Read-through	Repetitive element		+
8p23.1c	5′/3′	Read-through	Repetitive element	+	+
9q34.11	5′/3′	Intronic	CCBL1	+	+		+
10p14	5′/3′	Intronic	LINC00707		+		+
12q24.11a	5′	Intronic	PPTC7		+	+	+
12q24.33	5′/3′	Intronic	ZNF140	+	+	+	+
14q11.2	Δ5′/3′	Intronic	DHRS4L1	+
19q13.12b	5′/3′	Intronic	ZNF420	+	+
Sense-transcribed proviruses
1q21.3	Δ5′/3′	Read-through	Repetitive element	+	+
1q22a	5′/3′	lncRNA	BC041646		+	+	+
3q12.3	5′/3′	LTR driven		+	+
4p16.1b	5′/Δ3′	LTR driven		+
4p16.3a	5′	Intronic	ZNF876P				+

^aHuman-specific provirus.