Table 3.
Genome statistics
| Attribute | Value | % of Totala |
|---|---|---|
| Genome size (bp) | 3,497,418 | 100.00 |
| DNA coding (bp) | 2,930,787 | 83.80 |
| DNA G + C (bp) | 1,836,144 | 52.50 |
| DNA scaffolds | 141 | 100.00 |
| Total genesb | 3202 | 100.00 |
| Protein coding genes | 3149 | 98.34 |
| RNA genesc | 53 | 1.66 |
| Pseudo genes | n.d | n.d |
| Genes in internal clusters | n.d | n.d |
| Genes with function prediction | 1967 | 61.43 |
| Genes assigned to COGs | 2322 | 72.52 |
| Genes with Pfam domains | 2152 | 67,21 |
| Genes with signalpeptides | 374 | 11.68 |
| Genes with transmembrane helices | 727 | 22.70 |
| CRISPR repeats | 0 | 0 |
aThe total is based on either the size of the genome in base pairs or the total number of genes in theannotated genome
bIncludes tRNA, tmRNA, rRNA
cIncludes 23S, 16S and 5S rRNA