Bacterial and Virus Strains |
AAV5.CaMKIIα.GCaMP6m |
Grewe et al., 2017 |
N/A |
AAV5. EF1α. Flex. mCherry |
Penn Vector Core |
N/A |
Chemicals, Peptides, and Recombinant Proteins |
L-368,899 hydrochloride |
TOCRIS |
26-411-0 |
Critical Commercial Assays |
RNAscope Fluorescent Multiplex Reagent Kit |
Advanced Cell Diagnostics |
320850 |
RNAscope probe Mm-Slc32a1 |
Advanced Cell Diagnostics |
319191 |
RNAscope Probe Mm-Slc17a6-C2 |
Advanced Cell Diagnostics |
319171-C2 |
RNAscope Probe Mm-Oxtr-C3 |
Advanced Cell Diagnostics |
402651-C3 |
Experimental Models: Organisms/Strains |
Mouse: wild type C57BL/6J |
Jackson Laboratory |
JAX:000664 |
Mouse: Vgat-ires-Cre |
Watabe-Uchida et al., 2012 |
N/A |
Mouse: Vglut2-ires-Cre |
Krashes et al., 2014 |
N/A |
Software and Algorithms |
ImageJ |
NIH |
https://imagej.nih.gov/ij/ |
Cellprofiler |
Broad Institute |
http://cellprofiler.org/ |
MATLAB |
MathWorks |
https://www.mathworks.com/products/matlab.html |
Ca2+ signal acquision |
nVista |
https://www.inscopix.com/ |
Cellsort MATLAB algorithm for extracting cellular Ca2+ signals |
Ziv et al., 2013 |
N/A |
Registration of cell identities across imaging sessions |
Grewe et al., 2017 |
N/A |
Fast nonnegative deconvolution |
Vogelstein et al., 2010 |
N/A |
Other |
0.85-mm custom GRIN lens |
Grintech |
http://www.grintech.de/ |
Miniatureized microscope camera |
Inscopix |
https://www.inscopix.com/ |