Table 2. Primers used in this study.
# | Name | Sequence |
---|---|---|
1 | bnl-lexA gRNA fwd | TATATAGGAAAGATATCCGGGTGAACTTCgTGTATCTGCGATGCCCCTCAGTTTTAGAGCTAGAAATAGCAAG |
2 | bnl-lexA gRNA rev | ATTTTAACTTGCTATTTCTAGCTCTAAAACTCCCGCAATATCTGAAGGATcGACGTTAAATTGAAAATAGGTC |
3 | bnl N-F_pUC19 | AATTCGAGCTCGGTACtgtggtctttgaggctggaac |
4 | bnl-lexA-N-R | tCCGcaagtCagtAGgctgccgcgtccttcgccggaGCCCGCAGATACAAGGCCCC |
5 | lexA-F | CTactGacttgCGGaGAtGTcGAaGAGAACCCtGGCCCtATGCCACCCAAGAAGAAGC |
6 | lexA-R | CTAAACGAGTTTTTAAGCAAACTCACTC |
7 | bnl lexA-C Fwd | TAAAAACTCGTTTAGACGGGATGGCGTTGTCAAC |
8 | bnl C-R_pUC19 | GCCAAGCTTGCATGCCtcgcataattgccgcctgg |
9 | bnl-lexA scr fwd1 | GTGGCGCACGCCCAATAAAC |
10 | bnl-lexA scr rev1 | GATCCCAGCCAATCTCCGTTG |
11 | bnl-lexA scr fwd2 | CAACGGAGATTGGCTGGGATC |
12 | bnl-lexA scr rev2 | CTGGCCAACTGTAGGGAAGTC |
13 | ends-in check rev3 | GCAATGTTATGCAATGCGTTGAC |
14 | bnl-lexA seq fwd3 | CACTTGTCGCCCATATTGATACAATTG |
15 | lexA primer 5F | GATATGGATTTCTCCGCTTTGCTG |
16 | FGF domain R2 | CCATGCAGAGATACAGGCAAGTG |
Primer #1,2: were used for gRNA cloning; nucleotides underlined anneal to U6 promoter or gRNA core on pCFD4 vector, the lowercase g or c was added to aid transcription by the U6 promoter. Primer # 3, 4, 5, 6, 7, 8: for replacement donor construction, nucleotides in capital from # 3 or #8 overlap with pUC19 vector for Gibson Assembly, nucleotides underlined in # 4 or #5 were sequence overhang for T2A peptide addition. Primer # 9-14: were used for CRISPR screening and sequencing and were shown in Fig 2 as fwd1-3 and rev1-3. Primer # 15, 16: were used for RT-PCR analyses and were shown in Figure 2 as RT-f and RT-r.