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. Author manuscript; available in PMC: 2018 Jul 1.
Published in final edited form as: Dev Biol. 2017 May 11;427(1):35–48. doi: 10.1016/j.ydbio.2017.05.009

Table 2. Primers used in this study.

# Name Sequence
1 bnl-lexA gRNA fwd TATATAGGAAAGATATCCGGGTGAACTTCgTGTATCTGCGATGCCCCTCAGTTTTAGAGCTAGAAATAGCAAG
2 bnl-lexA gRNA rev ATTTTAACTTGCTATTTCTAGCTCTAAAACTCCCGCAATATCTGAAGGATcGACGTTAAATTGAAAATAGGTC
3 bnl N-F_pUC19 AATTCGAGCTCGGTACtgtggtctttgaggctggaac
4 bnl-lexA-N-R tCCGcaagtCagtAGgctgccgcgtccttcgccggaGCCCGCAGATACAAGGCCCC
5 lexA-F CTactGacttgCGGaGAtGTcGAaGAGAACCCtGGCCCtATGCCACCCAAGAAGAAGC
6 lexA-R CTAAACGAGTTTTTAAGCAAACTCACTC
7 bnl lexA-C Fwd TAAAAACTCGTTTAGACGGGATGGCGTTGTCAAC
8 bnl C-R_pUC19 GCCAAGCTTGCATGCCtcgcataattgccgcctgg
9 bnl-lexA scr fwd1 GTGGCGCACGCCCAATAAAC
10 bnl-lexA scr rev1 GATCCCAGCCAATCTCCGTTG
11 bnl-lexA scr fwd2 CAACGGAGATTGGCTGGGATC
12 bnl-lexA scr rev2 CTGGCCAACTGTAGGGAAGTC
13 ends-in check rev3 GCAATGTTATGCAATGCGTTGAC
14 bnl-lexA seq fwd3 CACTTGTCGCCCATATTGATACAATTG
15 lexA primer 5F GATATGGATTTCTCCGCTTTGCTG
16 FGF domain R2 CCATGCAGAGATACAGGCAAGTG

Primer #1,2: were used for gRNA cloning; nucleotides underlined anneal to U6 promoter or gRNA core on pCFD4 vector, the lowercase g or c was added to aid transcription by the U6 promoter. Primer # 3, 4, 5, 6, 7, 8: for replacement donor construction, nucleotides in capital from # 3 or #8 overlap with pUC19 vector for Gibson Assembly, nucleotides underlined in # 4 or #5 were sequence overhang for T2A peptide addition. Primer # 9-14: were used for CRISPR screening and sequencing and were shown in Fig 2 as fwd1-3 and rev1-3. Primer # 15, 16: were used for RT-PCR analyses and were shown in Figure 2 as RT-f and RT-r.