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. 2017 Dec 15;7:17639. doi: 10.1038/s41598-017-17918-6

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© The Author(s) 2017

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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The matching scheme illustrating the expected site specific usage at each aSD site by 5 nt SD sequences (e.g. 61 observed 5 nt SD sequences). Each aSD site (blue) is equally likely to participate in SD/aSD binding with an individual SD sequence (red) assuming there are no site specific selection biases. The aSD site specific expected usage is location-dependent, varying based on displacements of 61 sequences.