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. 2017 Oct 24;8(61):102888–102897. doi: 10.18632/oncotarget.21986

Table 3. Non-synonymous somatic variants identified in PB-DLBCL samples.

Sample Position Ref/Alt Gene Function Exon CDS change aa change
1 6:37140780 G/A PIM1 missense exon5 c.G616A p.V206M
6:106536093 C/CTCCA PRDM1 frameshift_variant exon2 c.60_61insCCGGCT p.Ser21fs
3 16:3820828 G/A CREBBP missense exon14 c.C2623T p.P875S
5 17:62006799 A/G CD79B missense exon5 c.T586C p.Y196H
3:38182641 T/C MYD88 missense exon5 c.T794C p.L265P
6:37138405 C/A PIM1 missense exon1 c.C54A p.N18K
6:37138427 G/A PIM1 missense exon1 c.G76A p.A26T
6:37139097 G/A PIM1 missense exon4 c.G437A p.S146N
6:37139180 C/T PIM1 missense exon4 c.C520T p.L174F
6:138200190 C/A TNFAIP3 stopgain exon7 c.C1608A p.C536X
6 12:49420433 G/A KMT2D missense exon48 c.C15316T p.R5106C
3:38182641 T/C MYD88 missense exon5 c.T794C p.L265P
7 7:2978320 C/T CARD11 missense exon7 c.G1010A p.R337Q
3:38182641 T/C MYD88 missense exon5 c.T794C p.L265P
8 7:2987341 G/A CARD11 missense exon3 c.C88T p.R30W
6:37139033 C/T PIM1 missense exon4 c.C373T p.P125S
9 17:62006797 G/C CD79B stopgain exon5 c.C588G p.Y196X
6:106536235 G/A PRDM1 missense exon2 c.G202A p.D68N
10 6:41903731 G/A CCND3 stopgain exon5 c.C826T p.Q276X
6:138200458 C/CT TNFAIP3 frameshift_variant exon7 c.1876_1877insT p.Leu626fs
11 11:108172446 G/A ATM stopgain exon35 c.G5249A p.W1750X
12a 11:108119789 C/T ATM missense exon9 c.C1195T p.H399Y
7:140482915 G/A BRAF missense exon10 c.C1220T p.P407L
16:3788614 G/A CREBBP missense exon26 c.C4340T p.T1447I
3:38182641 T/C MYD88 missense exon5 c.T794C p.L265P
6:37138401 G/A PIM1 missense exon1 c.G50A p.C17Y
6:37139039 C/T PIM1 stopgain exon4 c.C379T p.Q127X
17:40476822 G/A STAT3 stopgain exon17 c.C1507T p.Q503X
12b 3:38182641 T/C MYD88 missense exon5 c.T794C p.L265P
6:37138625 C/G PIM1 stopgain exon2 c.C159G p.Y53X
6:37138946 G/C PIM1 missense exon4 c.G286C p.V96L
6:37139210 C/T PIM1 missense exon4 c.C550T p.L184F
13 7:2977612 A/T CARD11 missense exon8 c.T1072A p.C358S
17:62006647 A/G CD79B missense exon6 c.T629C p.I210T
17:62006680 A/T CD79B missense exon6 c.T596A p.L199Q
3:38182641 T/C MYD88 missense exon5 c.T794C p.L265P
6:37138808 G/T PIM1 splice_donor_variant
6:37138597 TGGGCAGCGGCG/T PIM1 frameshift_variant exon2 c.132del11 p.Leu44fs
6:37139029 CGAGCCGGT/C PIM1 frameshift_variant exon4 c.370delGAGCCGGT p.Glu124fs
6:37139210 C/T PIM1 missense exon4 c.C550T p.L184F
16:81929465 C/T PLCG2 missense exon13 c.C1126T p.R376W
6:106536324 G/C PRDM1 missense exon2 c.G291C p.E97D
19:1622393 C/T TCF3 missense exon9 c.G571A p.E191K
14 12:49440169 C/T KMT2D missense exon16 c.G4457A p.G1486D
12:49433401 C/T KMT2D splice_acceptor_variant intron31
6:37138424 C/G PIM1 missense exon1 c.C73G p.L25V
15 6:37138769 C/T PIM1 missense exon3 c.C202T p.H68Y
6:37138976 C/T PIM1 missense exon4 c.C316T p.L106F
16 3:38182641 T/C MYD88 missense exon5 c.T794C p.L265P
6:37138354 G/A PIM1 start_lost exon1 c.G3A p.M1I
6:37138916 G/C PIM1 missense exon4 c.G256C p.V86L
6:37139204 C/T PIM1 missense exon4 c.C544T p.L182F

Ref, reference base; Alt, altered base; CDS, coding sequence; aa, aminoacid.