Table 4.

Marker associated with PEL at P-values < 0.05, their equivalent false discovery rate probability (FDR), proportion of PVE, and marker position on chromosome derived from 262 markers and 483 rice accessions.

Markers	Chr.	Position/Mb	E1			E2			E3			E4
			P-value	PVE/%	FDR	P-value	PVE/%	FDR	P-value	PVE/%	FDR	P-value	PVE/%	FDR
RM283	1	4.89	1.69E-02	3.27	1.84E-02	3.45E-02	2.86	3.61E-02	1.89E-02	3.20	2.94E-02	4.49E-02	2.72	4.50E-02
RM7288	2	9.03	2.28E-02	4.86	2.50E-02	4.70E-02	4.26	5.00E-02	9.94E-03	5.62	1.47E-02	9.22E-03	5.68	1.25E-02
RM6266	3	23.82	1.92E-02	2.44	2.05E-02	2.78E-02	2.24	3.06E-02	4.85E-02	1.93	5.00E-02	3.06E-02	2.15	3.50E-02
RM16	3	23.13	2.22E-02	1.20	2.27E-02	1.24E-02	1.44	1.39E-02	1.52E-02	1.33	2.35E-02	7.00E-03	1.63	1.00E-02
RM159	5	0.49	2.57E-02	4.81	2.73E-02	3.32E-02	4.62	3.38E-02	4.59E-02	4.29	4.71E-02	1.98E-02	4.96	2.25E-02
RM276	6	6.23	3.50E-02	3.11	3.64E-02	3.21E-02	3.16	3.72E-02	3.25E-02	3.20	3.53E-02	3.35E-02	3.20	3.75E-02
RM6811	6	29.23	1.25E-02	5.36	1.36E-02	1.94E-02	4.83	2.22E-02	3.02E-03	6.26	8.82E-03	6.47E-03	5.69	7.50E-03
RM152	8	0.68	3.69E-02	3.01	3.81E-02	4.66E-02	2.86	4.72E-02	1.27E-02	3.67	1.76E-02	9.93E-03	3.79	1.50E-02
RM524	9	17.64	1.38E-03	4.85	2.27E-03	6.56E-04	3.12	2.78E-03	1.03E-03	5.01	2.94E-03	6.49E-04	5.28	2.50E-03
RM410	9	12.92	3.97E-02	2.51	4.09E-02	1.31E-02	3.24	1.67E-02	1.76E-02	3.14	1.98E-02	1.71E-02	3.15	2.00E-02
RM6100	10	17.40	3.78E-03	2.50	6.82E-03	3.00E-03	2.57	5.56E-03	3.20E-03	2.56	3.65E-02	1.53E-02	2.84	1.75E-02
RM269	10	19.35	4.81E-02	2.98	5.00E-02	4.21E-02	3.30	4.44E-02	3.31E-02	3.37	3.82E-02	4.28E-02	3.47	4.70E-02
RM5746	12	5.09	3.67E-03	5.31	4.55E-03	4.19E-03	5.02	8.33E-03	1.50E-03	5.71	5.88E-03	2.11E-03	5.49	5.00E-03

E1 means 2015 in Nanjing; E2 means 2016 in Nanjing; E3 means 2015 in Yuanyang; E4 means 2016 in Yuanyang.