Table 3.
Nematode-responsive (NR) and Root-specific (RS) cis-elements used for screening of 6 NRRS genes passing Low Basal Intensity filter.
| Cis-element | Consensus sequence | Context | References |
|---|---|---|---|
| E-BOX | CAATTG | Binds to nuclear proteins from galls, nematode-responsive element | Escobar et al., 1999; Puzio et al., 2000 |
| EIRE | TTCGacc | Elicitor responsive element core | Puzio et al., 2000; Mitchum et al., 2004 |
| ERE | ATTTCaaa | Elicitation, wounding and pathogen | Sukno et al., 2006 |
| P-Box | CCTTtg | Conserved among nematode-responsive genes as well | Sukno et al., 2006 |
| WUN-Motif | aAATTtcct | Wound-responsive | Puzio et al., 2000 |
| TobRB7-Box-A | CGAGCTCGNNA | Root-specific and nematode-responsive | Yamamoto et al., 1991; Opperman et al., 1994; Mitchum et al., 2004 |
| TobRB7-Box-B | CAAAATGTGTTATTTTT | Root-specific and Nematode- responsive | |
| AS1-Box | TGACGTCA | Root-specific cis-element | Puzio et al., 2000 |
| Oryza sativa_Root-specific | gGTACGTGGCG | ABA responsive and root-specific cis-element | Ono et al., 1996 |
| FaRB7_root-specific | TTTCNTTTTGG | Conserved motif in root-specific genes | Vaughan et al., 2006 |
| W-Box | TTGACT | Cis-element essential for elicitor responsiveness | Yu et al., 2001; Thurau et al., 2003 |
| Sorlip1 | AGCCAC | Over-represented in root-specific genes | Jiao et al., 2005 |