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. 2017 Dec 15;84(1):e01868-17. doi: 10.1128/AEM.01868-17

TABLE 6.

Primers and annealing temperatures used in this study

Gene ID Target gene Target forma specialis Primer name Primer sequence (5′–3′) Tann (°C) Product size (nt)
+ FEM1 Positive control fp157 ATGAAGTACACTCTCGCTACC 54 274
fp158 GGTGAAAGTGAAAGAGTCACC
94 HPEG All cucurbit infecting fp7304 GCCTCATTGAAGTTTCAACA 54 346
fp7321 TGGTAAAGGACACGACCATT
13 SIX13 radicis-cucumerinum fp7305 TTGCCCAAAATGGCATGTTT 56 328
fp7322 CATTGACACTGTAAGTGGG
70 HPEG radicis-cucumerinum fp7306 TACAACCTCTCTCTTTCCTT 54 454
fp7323 GCTGAATTCTAGCAGAGAAT
66 HPEG cucumerinum fp7307 CCGTTATGGCCAGAGATC 54 425
fp7324 CCAACAAACAGAGCAAAACTAA
99 HPEG cucumerinum fp7308 CTACCAATCTCTCCTGAGTG 54 445
fp7325 GTCGATTGCAGTGCTAGTCT
21 Fom effector 7 cucumerinum fp7309 CAGTCTAACCCTGTCTCATT 54 381
fp7326 CGCCAATAGATAGTGATGGA
1 SIX1 melonis fp7310 CCTCTCAGTCCTTGGGTCT 54 397
fp7327 ACTCGCTTCAGCTTACCGA
20 Fom effector 6 melonis fp7406 TGAAAGTCTTGGCGGGTGT 56 305
fp7328 TCCTCTCCATCCTCATCAGT
18 Fom effector 3 melonis + niveum fp7312 TTAGTGCAGCTTTTCTCCTC 54 299
fp7329 AGTGGTTAGTCAAGTGGTAA
99 HPEG niveum fp7313 TGCCGGGCTAGTTAATATAGT 54 406
fp7330 ACCATTTTTCTGTTGGGGTTG
100 HPEG niveum fp7314 ATTTTGCTAGCTTCAGCAGTT 54 482
fp7331 ATCCTGAACGGTGACTAGAG
21 Fom effector 7 niveum fp7315 CGCTCGCTATAATTCAAACG 54 139
fp7332 GGAGGAGCACTACAACTAAT
71 HPEG lagenariae fp7407 TAGTCCAATCTGCCTCAGCAA 54 270
fp7410 GGAAGTGAGCATTCTTCCGTA
99 HPEG lagenariae fp7408 TCGTATCTCTCAGTAGTATGG 54 367
fp7411 AATGGATACCTTATAAGGGCT
1 SIX1 lagenariae + momordicae fp7409 TTGGGATTGCGGCTTATGCT 56 463
fp7412 AAAGTGGTACACTCCGTGC
98 HPEG momordicae fp7318 AGGTGCAGCGTTTTTAGGT 60 469
fp7335 GAGGGCTGGTTGAGAACTA
130 HPEG momordicae fp7319 TCTACGCTTCGAGGATGGTA 56 368
fp7336 TCGTTTAGACGACTACAACC
99 HPEG luffae fp7320 TACTCTCCTAGAGTCAGTCT 54 606
fp7337 CACGCCATCATCCTTTATTC