Table 3.

Protocols Available Through ROSIE

Application	Developer	API	Introduced	Jobsa	References
Docking2	Gray at JHU	Meta	January 2012b	17,054b	50 and 51
Symmetric docking	André at Lund	Meta	August 2013	1081	52
RNA redesign	Das at Stanford	Meta	October 2013	76c	36
Ligand docking	Meiler at Vanderbilt	Meta	January 2014	3722	53 and 54
pK a	Gray at JHU	Meta	January 2014	1078	55
Peptiderive	Furman at HUJ	Meta	May 2015	2057	56 and 57
Make exemplar	Karanicolas at FHCC	Meta	September 2015	167	58
Snug dock	Gray at JHU	Meta	May 2016	363	51 and 59
Tox dock	Bonneau at NYU	Meta	May 2016	50
Lipid accessibility	Bonneau at NYU	Meta	August 2016	141	60
FARFAR	Das at Stanford	Original	February 2012	1706	36
ERRASER	Das at Stanford	Original	October 2012	232	37
Beta peptide design	Das at Stanford	Original	November 2012	19	38
Supercharge	Kuhlman at UNC	Original	November 2012	1013	43
Antibody	Gray at JHU	Original	December 2012	5133	44 and 45
NCBB design	Bonneau at NYU	Original	December 2012	43	46
Sequence tolerance	Kortemme at UCSF	Original	January 2013	741	47 and 48
VIP	Havranek at WUSTL	Original	March 2013	412	49

^aAs of September 2017.

^bIncludes jobs run with the original API.

^cRNA Redesign runs on a separate backend, and not all jobs may be adequately counted.