Typical ChimeraX window, with structure (PDBid: 5gmk) in the main 3D display. Toolbars lie across the top and along the left, command and status lines across the bottom. Along the right are three docked tool windows, from top to bottom: Log, Models, and Side View. The Log is showing an HTML table containing chain information, where the chain letters are clickable links that will bring up the sequences of those chains. The Side View contains its own 3D depiction of the structure from the side.