Skip to main content
. 2017 Oct 25;27(1):146–158. doi: 10.1002/pro.3292

Table 2.

Relative Accuracies of Backbone Conformational Distribution Predicted from Sequencea

All PPII β αR β‐I αL other
P(X,r)b 1.15 1.06 1.10 1.11 1.33 2.82 1.12
P(LX,r)c 1.19 1.08 1.12 1.17 1.43 3.25 1.13
P(X‐R,r)d 1.21 1.09 1.13 1.21 1.48 3.34 1.13
P(L‐X,rP(X‐R,r)/P(X,r)e 1.25 1.12 1.15 1.27 1.59 3.91 1.14
P(L‐X‐R,r)f 1.19 1.10 1.13 1.16 1.44 2.87 1.12
P({L}‐X‐{R},r)g 1.22 1.11 1.14 1.20 1.51 3.57 1.13
PANN(L‐X‐R,r)h 1.28 1.11 1.15 1.30 1.70 4.59 1.13
a

Accuracy of the prediction P for residue X to be located in region r of the Ramachandran map, with r = PPII, β, αR, type I β‐turn (β‐I), αR and other. The reported value is relative to the probability that any residue, regardless of type or neighbors, is found in that region.

b

P(X,r) is the predicted probability of X being located in r when taking the residue type of X into account, compared to the fractional population of r, regardless of residue type.

c

P(LX,r) prediction based on left and center residue.

d

P(X‐R,r) prediction based on center and right neighbor residue.

e

Prediction accuracy when effect of left, center and right residue are considered independently. Note that the denominator term, P(X,r), is needed for normalization.

f

P(L‐X‐R,r) prediction based on fractional occurrence of L‐X‐R tripeptides in region r of the training library.

g

P({L}‐X‐{R},r) prediction based on fractional occurrence of {L}‐X‐{R} tripeptides in region r of the training library, using grouping of left and right neighbor residues.

h

PANN(L‐X‐R,r) prediction based on trained artificial neural network.