Table 2.
All | PPII | β | αR | β‐I | αL | other | |
---|---|---|---|---|---|---|---|
P(X,r)b | 1.15 | 1.06 | 1.10 | 1.11 | 1.33 | 2.82 | 1.12 |
P(L‐X,r)c | 1.19 | 1.08 | 1.12 | 1.17 | 1.43 | 3.25 | 1.13 |
P(X‐R,r)d | 1.21 | 1.09 | 1.13 | 1.21 | 1.48 | 3.34 | 1.13 |
P(L‐X,r)×P(X‐R,r)/P(X,r)e | 1.25 | 1.12 | 1.15 | 1.27 | 1.59 | 3.91 | 1.14 |
P(L‐X‐R,r)f | 1.19 | 1.10 | 1.13 | 1.16 | 1.44 | 2.87 | 1.12 |
P({L}‐X‐{R},r)g | 1.22 | 1.11 | 1.14 | 1.20 | 1.51 | 3.57 | 1.13 |
PANN(L‐X‐R,r)h | 1.28 | 1.11 | 1.15 | 1.30 | 1.70 | 4.59 | 1.13 |
Accuracy of the prediction P for residue X to be located in region r of the Ramachandran map, with r = PPII, β, αR, type I β‐turn (β‐I), αR and other. The reported value is relative to the probability that any residue, regardless of type or neighbors, is found in that region.
P(X,r) is the predicted probability of X being located in r when taking the residue type of X into account, compared to the fractional population of r, regardless of residue type.
P(L‐X,r) prediction based on left and center residue.
P(X‐R,r) prediction based on center and right neighbor residue.
Prediction accuracy when effect of left, center and right residue are considered independently. Note that the denominator term, P(X,r), is needed for normalization.
P(L‐X‐R,r) prediction based on fractional occurrence of L‐X‐R tripeptides in region r of the training library.
P({L}‐X‐{R},r) prediction based on fractional occurrence of {L}‐X‐{R} tripeptides in region r of the training library, using grouping of left and right neighbor residues.
PANN(L‐X‐R,r) prediction based on trained artificial neural network.