Table 1. Summary data of whole genome sequencing using Illumina HiSeq 2000 machine and aligned to the reference sheep genome (Oar3.1) using BWA-MEM.
Ram A | Affected 1 | Affected 2 | Dam of affected 1 | Dam of affected 2 | |
---|---|---|---|---|---|
Total Reads Mbp | 284 | 192 | 199 | 232 | 231 |
Mean quality score (PF) | 37.4 | 37.1 | 36.8 | 36.9 | 36.7 |
% ≥ Q30 | 93.4 | 92.4 | 91.5 | 91.8 | 90.9 |
Reads mapped % | 84 | 84 | 83 | 84 | 81 |
Mean genome coverage | 12.7 | 8.6 | 8.9 | 10.4 | 10.1 |