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. Author manuscript; available in PMC: 2017 Dec 18.
Published in final edited form as: Nat Methods. 2016 Oct 10;13(11):953–958. doi: 10.1038/nmeth.4028

Table 1. Selected expressed somatic nonsynonymous variants in cancer-related genes.

Gene DNA (ref/alt) RNA counts (ref/alt) Protein Cosmic census
TP53 T/C 0/76 Y220C Yes
ATM C/T 102/37 R45W Yes
EWSR1 C/T 26/9 P122L Yes
KIF3B C/T 170/64 R293W No
MCM3AP G/A 5/127 R1207C No
FAT1 C/T 11/44 V1274I No
MADD G/A 59/19 R225Q No
LRP1 G/T 16/3 D2106Y No
H2AFY G/A 13/43 R4C No
ZNF615 T/C 0/10 N154S No
CSTF1 G/A 51/68 G26S No