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. 2017 Dec 19;10:38. doi: 10.1186/s13040-017-0158-0

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© The Author(s). 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Workflow for TSPmap program. First, a matrix of recombination frequencies (rf) between markers is generated (either by R/QTL or with functions included with TSPmap). Next, the LKH solver is used to identify clusters of markers and merge clusters into linkage groups. Lastly, the Concorde solver is used to correctly order markers in each linkage group