Table 5.
Genome statistics
Attribute | Strain BS110 | Strain BS007 | Strain BS437 | |||
---|---|---|---|---|---|---|
Value | % of totala | Value | % of totala | Value | % of totala | |
Genome size (bp) | 11,178,081 | 100 | 11,025,273 | 100 | 11,303,071 | 100 |
Coding DNA (bp) | 9,596,382 | 85.85 | 9,573,245 | 86.83 | 9,724,031 | 86.03 |
DNA G + C content | 6,912,525 | 61.84 | 6,823,541 | 61.89 | 6,983,037 | 61.78 |
DNA Scaffolds | 658 | – | 788 | – | 843 | – |
Total genes | 11,984 | 100 | 11,991 | 100 | 12,333 | 100 |
Protein encoding genes | 10,288 | 85.85 | 10,411 | 86.83 | 10,610 | 86.03 |
RNA genes | 54 | 48 | 53 | |||
Pseudogenes | N/D | – | N/D | – | N/D | – |
Genes in internal clusters | N/D | – | N/D | – | N/D | – |
Genes with function prediction | 4458 | 37.2 | 4461 | 37.2 | 4743 | 38.46 |
Genes assigned to COGs | 8327 | 69.49 | 8273 | 69 | 8465 | 68.64 |
Genes assigned Pfam domains | 4015 | 33,50 | 3857 | 32.17 | 4106 | 33.29 |
Genes with signal peptides | 976 | 8.14 | 1001 | 8.35 | 1053 | 8.53 |
Genes with transmembrane helices | 1592 | 13,28 | 1555 | 12.97 | 1632 | 13.23 |
CRISPR spacers | 22 | 21 | 15 |
aThe total is based on either the size of the genome in base pairs or the total number of protein encoding genes in the annotated genome; N/D not determined