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. 2017 Dec 4;13(12):e1006732. doi: 10.1371/journal.ppat.1006732

Table 1. Primer sequences (complementary to the coding sequence) used in PCR to generate mutations in the gB epitope (SSIEFARL) region.

Name Resulting Mutation Reverse primers used*
WT SSIEFARL (none) 5’ GTT GTA CGT AAA CTG CAG CCT GGC GAA CTC GAT GGA GGA GGT GGT CTT GAT GCG CTC CA 3’
L8A SSIEFARA 5 ‘ GTT GTA CGT AAA CTG agc CCT GGC GAA CTC GAT GGA GGA GGT GGT CTT GAT GCG CTC CA 3’
F5L SSIELARL 5’ GTT GTA CGT AAA CTG CAG CCT GGC cAA CTC GAT GGA GGT GGT CTT GAT GCG CTC CA 3’
S1G GSIEFARL 5’ GTT GTA CGT AAA CTG CAG CCT GGC GAA CTC GAT GGA ccc GGT CTT GAT GCG CTC CA 3’
S1L LSIEFARL 5’ GTT GTA CGT AAA CTG CAG CCT GGC GAA CTC GAT GGA caa GGT GGT CTT GAT GCG CTC CA 3’
S1G/L8A GSIEFARA 5’ GTT GTA CGT AAA CGT agc CCT GGC GAA CTC GAT GGA ccc GGT GGT CTT GAT GCG CTC CA 3’
S1G/I3A GSAEFARL 5’ GTT GTA CGT AAA CTG CAG CCT GGC GAA CTC Ggc GGA ccc GGT GGT CTT GAT GCG CTC CA 3’
L8A/R7K SSIEFAKA 5’ GTT GTA CGT AAA CGT agc CtT GGC GAA CTC GAT GGA GGA GGT GGT CTT GAT GCG CTC CA 3’
S1G/I3N/F5L/E4S(SIFE) GSNSLARL 5’ GTT GTA CGT AAA Ctg CAG CCT GGC cAA gct GtT GGA ccc GGT GGT CTT GAT GCG CTC CA 3’

*The restriction site of SnaBI used in cloning is shown in bold. Changes from the wild type sequence are shown in lower case letters.