Table 3.
Transcription factor binding site analyses of ATG5 rs510532 and ATG10 rs10036653.
| SNPs | Score RegulomeDB* | Method | Location | Motif | Reference |
|---|---|---|---|---|---|
| ATG5 rs510432 | 3a | PWM | chr6:106774020..106774034 | Mtf1 | 38 |
| ATG10 rs10036653 | 6 | PWM | chr5:81266375..81266390 | Sox5 | 39 |
| PWM | chr5:81266368..81266383 | Oct-4 (POU5F1) | 38 | ||
| Footprinting | chr5:81266368..81266383 | Oct-4 (POU5F1) | 40 |
Note: PWM, Position-Weight Matrix for TF binding; Footprinting, DNase Footprinting.
All results were from RegulomeDB.
*“3a” means “TF binding + any motif + DNase peak” is supportive for transcription factor binding, while “6” means the results is verified by “other” methods.